[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58129.1
DDBJ      :             TatD-related deoxyribonuclease
Swiss-Prot:             

Homologs  Archaea  43/68 : Bacteria  908/915 : Eukaryota  150/199 : Viruses  0/175   --->[See Alignment]
c.1.9
:261 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->254 1yixA PDBj 1e-60 48.8 %
:RPS:PDB   2->222 3bq6B PDBj 2e-38 11.8 %
:RPS:SCOP  3->254 1j6oA  c.1.9.12 * 1e-69 34.5 %
:HMM:SCOP  1->257 1yixA1 c.1.9.12 * 3.3e-84 48.0 %
:RPS:PFM   3->254 PF01026 * TatD_DNase 2e-59 50.2 %
:HMM:PFM   3->255 PF01026 * TatD_DNase 6.1e-80 41.8 249/255  
:BLT:SWISS 2->254 Y454_HAEIN 1e-61 44.7 %
:PROS 191->207|PS01091|TATD_3
:PROS 2->10|PS01137|TATD_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58129.1 GT:GENE ABA58129.1 GT:PRODUCT TatD-related deoxyribonuclease GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(1851847..1852632) GB:FROM 1851847 GB:TO 1852632 GB:DIRECTION - GB:PRODUCT TatD-related deoxyribonuclease GB:PROTEIN_ID ABA58129.1 GB:DB_XREF GI:76883448 InterPro:IPR001130 LENGTH 261 SQ:AASEQ MLVDSHCHLNLLDLTPFDGSVHSVMEESRKAGISHMLCVSVDLETFPDIRALAQEYAEISVSVGIHPNASKDVKITVEQLLELAATPKVVAIGETGLDYFRSEGDLAWQRERLRIHIAAAKECGKPLIIHTRQAKRDTVRILKEEGADEVGGVLHCFTEDWETAKEGLDLGFYISFSGIITFRNAGVLRKVATQIPSNRLLIETDSPYLAPVPHRGTPNRPAYVRYVAQCMADLRKISLADLEDLTTENFFSLFSEAALPA GT:EXON 1|1-261:0| BL:SWS:NREP 1 BL:SWS:REP 2->254|Y454_HAEIN|1e-61|44.7|253/260| PROS 191->207|PS01091|TATD_3|PDOC00836| PROS 2->10|PS01137|TATD_1|PDOC00836| BL:PDB:NREP 1 BL:PDB:REP 2->254|1yixA|1e-60|48.8|252/265| RP:PDB:NREP 1 RP:PDB:REP 2->222|3bq6B|2e-38|11.8|212/718| RP:PFM:NREP 1 RP:PFM:REP 3->254|PF01026|2e-59|50.2|249/255|TatD_DNase| HM:PFM:NREP 1 HM:PFM:REP 3->255|PF01026|6.1e-80|41.8|249/255|TatD_DNase| GO:PFM:NREP 1 GO:PFM GO:0016888|"GO:endodeoxyribonuclease activity, producing 5'-phosphomonoesters"|PF01026|IPR001130| RP:SCP:NREP 1 RP:SCP:REP 3->254|1j6oA|1e-69|34.5|249/260|c.1.9.12| HM:SCP:REP 1->257|1yixA1|3.3e-84|48.0|256/0|c.1.9.12|1/1|Metallo-dependent hydrolases| OP:NHOMO 1768 OP:NHOMOORG 1101 OP:PATTERN --1-11121111111221--1-----------22111111111-----1111111111111---11-1 1111111111111111111-12111111111111111111111111111111111111111111111111111111111111111111111111111--1121111111211111111111111111111111111111111111111111111111111111111111111111111111111111111111122222212122222211111122212111111111112221111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111211111111111111111111111111111-11111112111122211111111111111111111111111111111111111111111111111111111111111111111111111122222222222222222222222222222222422222222222222222232222222222222111223212111211111111222222232212221111111111111111111111111111223323223333333333333333333333331-2111211111133333333334333433-33333333333433333333333322233333333333333333332333311323233333333111311111111112333222222222212222332232211232333333333333333332212122122333333333333332112222222222211311111111111111122111112-11211111111111211111111111111121 ----342-21111-2-11-1-1--211---11------------1111111112111-111111--------1-1--------11111-24211261111-11111112272541321112333A233-7L4135432-16244334233321512235222243113223245212-1E2211222321421232321 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 257 STR:RPRED 98.5 SQ:SECSTR ccTTcccEEEEccccccccccccccccHHHHHHHHHHTTTcccEEEEEHHHTcEETTEEcccHHHHHHHHHHHHHHHHHHHHHHTTcccEEEEcGGGGccccHcccHHHHHHHHHHHHTTTTTTccEEEEccccccccHHHHHTccccEEEEEcccccHHHHHHHHHcccTTcEEEEEEEcccccccHHHHHHHHHHTccEEEEcccGGcccccTTcccccTHHHTHHHHHHHHcTccHHHHHHHHTHHHHHHHccc#### DISOP:02AL 260-262| PSIPRED cEEEEEccccccccHHHHccHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHcccEEEEEEEcccHHHcccHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHHHHcccccccEEEEcccccHHHHHHHHHcccEEEEccccccccHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccc //