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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58131.1
DDBJ      :             DNA polymerase III, delta prime subunit
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  892/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
a.80.1c.37.1
:337 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->296 1jr3E PDBj 2e-27 28.1 %
:RPS:PDB   61->222 3c58A PDBj 1e-15 6.2 %
:RPS:SCOP  9->210 1jr3A2  c.37.1.20 * 8e-34 30.3 %
:HMM:SCOP  1->210 1a5tA2 c.37.1.20 * 5.8e-47 30.4 %
:HMM:SCOP  211->336 1a5tA1 a.80.1.1 * 2.9e-08 26.8 %
:RPS:PFM   232->298 PF09115 * DNApol3-delta_C 7e-05 27.3 %
:HMM:PFM   210->326 PF09115 * DNApol3-delta_C 8.2e-27 31.3 115/119  
:HMM:PFM   28->165 PF00004 * AAA 0.00018 22.1 122/130  
:BLT:SWISS 4->305 HOLB_YERPE 2e-30 32.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58131.1 GT:GENE ABA58131.1 GT:PRODUCT DNA polymerase III, delta prime subunit GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(1853043..1854056) GB:FROM 1853043 GB:TO 1854056 GB:DIRECTION - GB:PRODUCT DNA polymerase III, delta prime subunit GB:PROTEIN_ID ABA58131.1 GB:DB_XREF GI:76883450 InterPro:IPR000862 LENGTH 337 SQ:AASEQ MPEFYPWHQSHWNSLMASQIAKRMPHAILLMGPEGMGKRSFASNLIQALSCEYPQKGGHGCGSCAGCRLQLAGSHPDNLTLFPREGKQTISVNQIRQLHSHLALKARQSLFKTVIIYPAEEMTLSAANSLLKILEEPPGRTVLLLITSASLRLPITIRSRCQQLFFTISKSQEVKMWLQQRLPPSMNLDAVTLLRLSGGGPLRALEYVEQNFLFYRKEFINNLFSLTQGKLDLFEMVRSCLKDNLGEPLYWISTLVEDTIRLRSGVSKRFLVNHDVANSLQLLARRASFEMLFALLKKASCNREIWKGQININPQLLLEEILIQWLICFSKVNHEHT GT:EXON 1|1-337:0| BL:SWS:NREP 1 BL:SWS:REP 4->305|HOLB_YERPE|2e-30|32.1|299/340| SEG 310->327|ininpqllleeiliqwli| BL:PDB:NREP 1 BL:PDB:REP 4->296|1jr3E|2e-27|28.1|288/334| RP:PDB:NREP 1 RP:PDB:REP 61->222|3c58A|1e-15|6.2|161/269| RP:PFM:NREP 1 RP:PFM:REP 232->298|PF09115|7e-05|27.3|66/119|DNApol3-delta_C| HM:PFM:NREP 2 HM:PFM:REP 210->326|PF09115|8.2e-27|31.3|115/119|DNApol3-delta_C| HM:PFM:REP 28->165|PF00004|0.00018|22.1|122/130|AAA| GO:PFM:NREP 4 GO:PFM GO:0003677|"GO:DNA binding"|PF09115|IPR015199| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF09115|IPR015199| GO:PFM GO:0006260|"GO:DNA replication"|PF09115|IPR015199| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF09115|IPR015199| RP:SCP:NREP 1 RP:SCP:REP 9->210|1jr3A2|8e-34|30.3|198/240|c.37.1.20| HM:SCP:REP 1->210|1a5tA2|5.8e-47|30.4|207/0|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 211->336|1a5tA1|2.9e-08|26.8|123/123|a.80.1.1|1/1|DNA polymerase III clamp loader subunits, C-terminal domain| OP:NHOMO 1561 OP:NHOMOORG 901 OP:PATTERN -------------------------------------------------------------------- 2211222222222222222-2222222222222222222221-222222112222222112222222222211111112222221222111211111---21-1-121211222222112222222211211221122122222221231111212211112121222411221112121111222112222222222222222222422222222222224212222222222222222222222221222222222212222222222222---2222222211222222222222222222222211222222222222122222222222222121222111222112222222222222122222111122222111111221121222112111111111111-1---1-1-11112111111111112221222122222222222222212222222222121-111111111-1111111211121222222222222222222222222222222222222222122222222222222222222222222222222222222222111111111122222222222222122111111111111111-111111111222222222222222222222222222222222-2222222122221222222222222222-22222222222222222222222222221222222222222222222222221222222222222222222222222222222222222222222222222222211222222222222222222221111111112222222222222222222222222222222211122111111111111111112-111111111111-1111111111111111112 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1------2--------------2312-32--1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 291 STR:RPRED 86.4 SQ:SECSTR ###ccGGGHHHHHHHHHHHHTTccccEEEEEccTTccHHHHHHHHHHHHTcccccTTcHcHHHHHHHHHHHTTccccEEEEccGGGcTTccHHHHHHHHTTccEEEEEEETTEEEEEETTTEEEcTTTcEEEEEcTTcEEEEEEccccEEEEEcTTcccEEEEEEGGGHHHHHHHHTccccccTTTccHHHHHHHHHTccccHHHHHHTccccccccHHHHHTTcEEEEEcccHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTccc##cccTTcHHHHHHHHHHccHHHHHHHH######################################### DISOP:02AL 333-337| PSIPRED cccccccHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccEEEEEEEcccccccHHHHHHHHHHHHHcccccccEEEEEEcHHHccHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHcccEEEEcccccHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccc //