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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58252.1
DDBJ      :             ABC transporter, inner membrane subunit
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  377/915 : Eukaryota  11/199 : Viruses  0/175   --->[See Alignment]
:385 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   14->139 3cp8D PDBj 6e-04 17.6 %
:RPS:PFM   192->348 PF01061 * ABC2_membrane 4e-21 40.4 %
:HMM:PFM   186->348 PF01061 * ABC2_membrane 4.9e-25 30.1 153/208  
:BLT:SWISS 15->385 YBHS_ECOLI 8e-81 41.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58252.1 GT:GENE ABA58252.1 GT:PRODUCT ABC transporter, inner membrane subunit GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 2008728..2009885 GB:FROM 2008728 GB:TO 2009885 GB:DIRECTION + GB:PRODUCT ABC transporter, inner membrane subunit GB:PROTEIN_ID ABA58252.1 GB:DB_XREF GI:76883571 InterPro:IPR000412 LENGTH 385 SQ:AASEQ MPQSPTTPSHPPPYLRLQRLRGLVIKETRQILRDPSSIGIAFVLPAILLLLFGYGVSLDAKHVQIALVVEQPTDTTARFTAFFMSSEYFKPVFLPQRQAAEKALLAGEVRGMVVLRENFAKQIHQQGGAPIQVIVDGADANTGRQILGYVRRVWQDWLVLEARHQGLTFQQPVHQEFRIWFNPEVRSQNFLVPGLMAIIMTLTGALLTSLLVAREYDRGTIESLMVTPVTPNELLLGKLIPTFILGMGGMALSFALGVGLFEVPFRGSLWVLFVTAALFMLATLGMGLLISTLAKDQFVAGQIAIMVTFLPAFLLSGFIFNLASTPSWIQAVSYLIAARYFIEILKTLFLVGNIWNVIVPNGVALFLMAGVLLTLSRVLTRKRLD GT:EXON 1|1-385:0| BL:SWS:NREP 1 BL:SWS:REP 15->385|YBHS_ECOLI|8e-81|41.8|371/377| TM:NTM 7 TM:REGION 32->54| TM:REGION 190->212| TM:REGION 238->260| TM:REGION 270->292| TM:REGION 300->322| TM:REGION 329->351| TM:REGION 357->379| SEG 2->13|pqspttpshppp| RP:PDB:NREP 1 RP:PDB:REP 14->139|3cp8D|6e-04|17.6|119/552| RP:PFM:NREP 1 RP:PFM:REP 192->348|PF01061|4e-21|40.4|156/208|ABC2_membrane| HM:PFM:NREP 1 HM:PFM:REP 186->348|PF01061|4.9e-25|30.1|153/208|ABC2_membrane| GO:PFM:NREP 1 GO:PFM GO:0016020|"GO:membrane"|PF01061|IPR013525| OP:NHOMO 916 OP:NHOMOORG 397 OP:PATTERN -----------------------1--------1--------------11-122--1--------1--- -22-1-------1-----------1--------------1------------1-------1------------------------2--3331-2------2-1--2-2-1--------------22-----22-22---21333-----2-------------3--2-22--------------------2------------------1---------1-----------2-----1----------11-1------------1--------------111-----------------------------------------1--1-----1-------11----1----2--3---1233--23---1---14-3--3-----443351-25813323232222333-2222222-214--2242224222237-21--31222--2222222222-1--153-------------------------------12-2221-13--2-1-2-2244-12222-41441115--111---242-142-2-212--22-------42222224422-21311222-2224442-22222--622--22-----------------2224211513-121--11111-311111111-111---2---------422222-4444444444-4444444444444444444555-2225424434444443434424424434--2--2222--222-----1--1333312321111212--------2--32-2----41222424222222-4---1111--1-12-111-111111-1111-----------------------------------------------------------1--------222 --------------------------------------------------------------------------------------------------------------2-1----------------------------------------------11--2-E-2124-----------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 119 STR:RPRED 30.9 SQ:SECSTR #############ccTcEEEETTEEEEccccTTccccccHHHHHHHTTccEEEEEEEEEGGGccTTTcEEEcccccccccc#ccccccGGGccccEEEEEccH######HHHHHHHTTTTTcTTcccccccHHHHHccc###################################################################################################################################################################################################################################################### DISOP:02AL 1-6, 8-10, 161-173| PSIPRED ccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHHcccccEEEEEEccHHHHHHHHHcccEEEEEEEcccHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc //