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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58274.1
DDBJ      :             Type I site-specific deoxyribonuclease HsdR
Swiss-Prot:             

Homologs  Archaea  23/68 : Bacteria  344/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
b.69.12c.37.1
:1068 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   106->742 2w00A PDBj 7e-26 29.0 %
:BLT:PDB   793->861 3fb2B PDBj 5e-04 36.4 %
:RPS:PDB   542->608 2a3dA PDBj 9e-17 16.4 %
:RPS:PDB   903->1057 3chhA PDBj 4e-04 13.5 %
:RPS:SCOP  166->297 1olzA2  b.69.12.1 * 6e-05 26.2 %
:RPS:SCOP  640->712 2fwrA1  c.37.1.19 * 4e-05 14.1 %
:HMM:SCOP  226->536 1z3iX2 c.37.1.19 * 9e-28 23.5 %
:HMM:SCOP  422->717 2fwrA1 c.37.1.19 * 1e-05 18.1 %
:RPS:PFM   72->216 PF04313 * HSDR_N 5e-18 43.1 %
:RPS:PFM   316->475 PF04851 * ResIII 1e-04 35.5 %
:RPS:PFM   739->1055 PF11867 * DUF3387 8e-82 53.2 %
:HMM:PFM   726->1058 PF11867 * DUF3387 3.8e-130 56.6 327/335  
:HMM:PFM   1->217 PF04313 * HSDR_N 5.4e-35 35.5 169/185  
:HMM:PFM   282->474 PF04851 * ResIII 1.7e-17 26.0 150/184  
:BLT:SWISS 1->1058 T1RH_HAEIN 0.0 50.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58274.1 GT:GENE ABA58274.1 GT:PRODUCT Type I site-specific deoxyribonuclease HsdR GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2039740..2042946) GB:FROM 2039740 GB:TO 2042946 GB:DIRECTION - GB:PRODUCT Type I site-specific deoxyribonuclease HsdR GB:PROTEIN_ID ABA58274.1 GB:DB_XREF GI:76883593 InterPro:IPR004473 InterPro:IPR006935 InterPro:IPR007409 InterPro:IPR011545 LENGTH 1068 SQ:AASEQ MTEEQLEQQCLAWFAEGGWELAHGSDLAPGRADYRQVWLLADLEAAIRRINPHLPESCIEQVVAVVGKPESLDTVVSNRAFHRLLLEGVPVEYKTLSSLSPWERAGVREREEKIVHDRALLIDFDDLNANRFRAINQFTLLGSKQLRRPDIICFINGLPLAVLELKSPHAENVDIWDAFHQLQTYKDEIPELFVFNEALVISDGYHARVGSLTANQERFMPWRTLKHEDDKPLLDWQLETLVRGFFDRELFLDYLRYFVIFETDSGRLSKKIAGYHQFHAVREAVKATVIAAQEPRQRWAGEKRATYADDLVPGSKKAGVVWHTQGSGKSLSMCCYAGKLLQQPEMNNPTLMVVTDRNDLDGQLFATFSAAKELLKQEPVQAEDRDTLRRLLAERASGGIIFTTVQKFALLDGENDHPILNDRHNIVVISDEAHRSQYGLKATLKKDGRYTFGYAKHMRDALPNASFIGFTGTPIANEDKDTRAVFGDYVSIYDIQDAVDDGATVPIYYESRLAKLDINRELIEKLSDQVEAVVEDEEDLGQREKTKGEWSRLEKLVGSGPRLKQVAADLVRHFEIRSQSMDGKAMIVAMSREICVHLYNEIVALRPDWHDPDPEKGAIKIVMTGSASDRPLLQPHLYNQQTKKRLEKRFKDIYDPLKLVIVRDMWLTGFDAPCCHTMYVDKPMKGHNLMQAIARVNRVFKNKPGGLVVDYIGIANALKQALKTYTDAKGKGEPTHSAEEAFAVLLEKLDIIHGLFAKTPQNAGFDYSSFEHEATRLLIPTANYILSLEGGKKRFLDTILAVNMAYSLCGTLEEARAYHKEVAFLSAVKAALTKHTRVDKKLTQEEKNSALKQILDNALVAEGVTDVFALCGLDKPNIGLLSEEFLEDVRRMPYKNFAVELLEKLLKDNIKAKTRNNVVQEKKYADRLQETLRQYNNRGIETAQVIEELIAMAKQFQAELERDEALGLNPDEVAFYDALANNESAVRELGDETLKKIAVEITDKLRRSTTVDWQVRESIRAKLRILVRRTLQRYKYPPDKAPEAVELILQQAEVLSDEKRNALTRKNG GT:EXON 1|1-1068:0| BL:SWS:NREP 1 BL:SWS:REP 1->1058|T1RH_HAEIN|0.0|50.3|1013/1055| SEG 528->539|dqveavvedeed| BL:PDB:NREP 2 BL:PDB:REP 106->742|2w00A|7e-26|29.0|576/829| BL:PDB:REP 793->861|3fb2B|5e-04|36.4|66/197| RP:PDB:NREP 2 RP:PDB:REP 542->608|2a3dA|9e-17|16.4|67/73| RP:PDB:REP 903->1057|3chhA|4e-04|13.5|148/300| RP:PFM:NREP 3 RP:PFM:REP 72->216|PF04313|5e-18|43.1|123/142|HSDR_N| RP:PFM:REP 316->475|PF04851|1e-04|35.5|138/177|ResIII| RP:PFM:REP 739->1055|PF11867|8e-82|53.2|310/329|DUF3387| HM:PFM:NREP 3 HM:PFM:REP 726->1058|PF11867|3.8e-130|56.6|327/335|DUF3387| HM:PFM:REP 1->217|PF04313|5.4e-35|35.5|169/185|HSDR_N| HM:PFM:REP 282->474|PF04851|1.7e-17|26.0|150/184|ResIII| GO:PFM:NREP 6 GO:PFM GO:0003677|"GO:DNA binding"|PF04313|IPR007409| GO:PFM GO:0004519|"GO:endonuclease activity"|PF04313|IPR007409| GO:PFM GO:0006304|"GO:DNA modification"|PF04313|IPR007409| GO:PFM GO:0003677|"GO:DNA binding"|PF04851|IPR006935| GO:PFM GO:0005524|"GO:ATP binding"|PF04851|IPR006935| GO:PFM GO:0016787|"GO:hydrolase activity"|PF04851|IPR006935| RP:SCP:NREP 2 RP:SCP:REP 166->297|1olzA2|6e-05|26.2|122/474|b.69.12.1| RP:SCP:REP 640->712|2fwrA1|4e-05|14.1|71/200|c.37.1.19| HM:SCP:REP 226->536|1z3iX2|9e-28|23.5|272/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 422->717|2fwrA1|1e-05|18.1|199/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 549 OP:NHOMOORG 368 OP:PATTERN ----1------------------1-11--1---1113--2112-11-1-2214-1------1-----1 11----12---2-2-1----------------11-1-----21--2-22----111------1---1---------11-1-2---1---212---------2-21-211-----------------11112--2-2111-21-------2132----1------22-21---------------2-------11-----1-----------22-----31-----1-1--11--11212211211112--111---111------111-2-1-1--1-1-----1-11------------1111111111111-221112221-2--1----11-1--1-111-1-----31111--11-1111111--2---2-1---------111--------1-1111111111------------1------1-1---1------------11142444444---1-------------------1--2----------------2-------1-----------1-1--1-11--1----2--2111-112-5--1131--1211---121-1111-15---2-12-1----12--321-1----1--1-1-1-2-1-1-323331-11-1-33--3-2--1-1--41-2-2-3-13-1--4----132-2-------1-14-1--------2-------2-----1--------1--111--1--1-1--1------1-------------2----122-------------3----1121-1-21113111--1---1132-11-------1----12----2--2---1111-111514---4---223211-3233--11--11-1--------1-2----------11----1---4-1111-2-1------11 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 835 STR:RPRED 78.2 SQ:SECSTR #########################################################################################################cHHHHHHHHHTccEEEEEcTTccEEEEEccccccGGccEEEcccEEEEEETTEEEEEEEEcc###TTccHHHHHHHHccccG####GGGGccEEEEEccccEEEEEccccGGGGcEEE####cTTccEEc#cHHHHHTTTTcHHHHHHHHHHcEEEcTTccEE################EcHHHHHHHH#HHHHHHHHHHHHTccccGGG##cEEEEEcTTccHHHH#HHHHHHHHTTcTTccEEEEEE#cGGGccHH#######HHHHHTTcTTcccccHHHHHHH#HcccccEEEEEHHHHHHHHHccccGGGGcc##EEEEEEcccTTHHHHHHHHHHHcccEEEE##############EEEccccccTTccHHHHHccEEEEEcHHHHHHHTccccEEccccGGGHHHHTcccHHHHHTccTTTTTcHHHHHHHHHHHHHHHHHHcccGGGTHHHHHHHHHHHHHHHHHcccccccTTTHHHHHHHHHHHHHHHHTTccccGGGcHHHHHHH###HHHHHHHHHHHTccccccHHHHHHHHHHHHHHHTTcccEEEEccTccTTEEEEEEEccccHHHH#HHHHTTccccTTcccEEEEEccccHHHHHHHHHHTccccHHHcccHHHHHcE##################################################HHHHHHHHHHHHHHHHH###HHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTcccHHHHHHHHHHHHHHHHcTcHHHHHHHHHHHHHHHccEEHHHcHHHHcTTGGGGGTTccTTcccccGGGcTTTTcHHHHTccHHHHHH###HHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTccTTTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccccccccHHHHHHHHHHTT########### DISOP:02AL 959-968, 1064-1068| PSIPRED ccHHHHHHHHHHHHHHcccEEccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccEEEEEEEcccccccEEEEEEEEEEEccccccccEEEEEEcccEEEEEEEEccccccccHHHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEcccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHcEEEEcccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHcccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHccccEEEEEHHHHHHcccEEEEEEEEEEEEEEccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccHHHHHHHccHHHHHHHHHHHccccccccEEEEEcHHHcccccccEEEEEEEcccccHHHHHHHHHHccccccccEEEEEEccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc //