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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58278.1
DDBJ      :             Restriction modification system DNA specificity domain
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  83/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.287.1
:483 amino acids
:SECSTR
:PSIPRED
:RPS:PDB   97->171 1admA PDBj 5e-06 11.0 %
:RPS:SCOP  4->209 1yf2A1  d.287.1.2 * 7e-17 16.1 %
:RPS:SCOP  260->466 1yf2A1  d.287.1.2 * 1e-24 20.6 %
:HMM:SCOP  4->210 1yf2A2 d.287.1.2 * 6.2e-29 26.5 %
:HMM:SCOP  258->469 1yf2A1 d.287.1.2 * 2e-26 25.4 %
:RPS:PFM   5->190 PF01420 * Methylase_S 2e-06 27.8 %
:HMM:PFM   4->192 PF01420 * Methylase_S 1.1e-11 22.7 163/167  
:HMM:PFM   274->415 PF01420 * Methylase_S 8.8e-09 20.3 133/167  
:HMM:PFM   202->266 PF08800 * VirE_N 0.0009 23.1 65/136  
:BLT:SWISS 109->460 T1SH_HAEIN 2e-41 33.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58278.1 GT:GENE ABA58278.1 GT:PRODUCT Restriction modification system DNA specificity domain GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2045515..2046966) GB:FROM 2045515 GB:TO 2046966 GB:DIRECTION - GB:PRODUCT Restriction modification system DNA specificity domain GB:PROTEIN_ID ABA58278.1 GB:DB_XREF GI:76883597 InterPro:IPR000055 LENGTH 483 SQ:AASEQ MSCEWPLVTLSKLIEIKHGWAFKGKHMAESVIKGPIVVAIGNFDYSGGFRFSSTRIKRYTEDYPKEYQLQPGDVLLAMTCQTPGGEILGLPGIIPEDDEVYLHNQRLGKLIVKEPKKVWAPFLYWVFLSYDFNRYLAGSATGTKILHTSPNKITSYETRIPPINLQQSIANILWSISDKISLNHQINQILEQMAQAIFKSWFVDFEPVKAKIAALKAGGSQEDALLAAMQAISGKSSEQLTRLQAEQPEQYAQLRTTAELFPSAMQDSELGEIPEGWSCRALDDIAKYKNGLALQKFRPENENDYLPVVKIAQLKKGYADGEEKASPNINPECIIDNGDVVFSWSGSLLVDTWCGGRAALNQHLFKVTSETHPKWLYYHFTQHHLEDFQRIAADKAVTMGHIKREHLKRALCAIPCEQLISDAGNSLRNILEKQIELRLESITLSTLRDTLLPKLLSGELSISDAESRVSEMDVSACTEDSLL GT:EXON 1|1-483:0| BL:SWS:NREP 1 BL:SWS:REP 109->460|T1SH_HAEIN|2e-41|33.3|351/459| SEG 83->96|pggeilglpgiipe| RP:PDB:NREP 1 RP:PDB:REP 97->171|1admA|5e-06|11.0|73/415| RP:PFM:NREP 1 RP:PFM:REP 5->190|PF01420|2e-06|27.8|162/167|Methylase_S| HM:PFM:NREP 3 HM:PFM:REP 4->192|PF01420|1.1e-11|22.7|163/167|Methylase_S| HM:PFM:REP 274->415|PF01420|8.8e-09|20.3|133/167|Methylase_S| HM:PFM:REP 202->266|PF08800|0.0009|23.1|65/136|VirE_N| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF01420|IPR000055| GO:PFM GO:0006304|"GO:DNA modification"|PF01420|IPR000055| RP:SCP:NREP 2 RP:SCP:REP 4->209|1yf2A1|7e-17|16.1|194/220|d.287.1.2| RP:SCP:REP 260->466|1yf2A1|1e-24|20.6|204/220|d.287.1.2| HM:SCP:REP 4->210|1yf2A2|6.2e-29|26.5|196/0|d.287.1.2|1/2|DNA methylase specificity domain| HM:SCP:REP 258->469|1yf2A1|2e-26|25.4|209/0|d.287.1.2|2/2|DNA methylase specificity domain| OP:NHOMO 98 OP:NHOMOORG 86 OP:PATTERN -----------------------------------------1----------1--------------- -1------------------------------1--------------------1-------------------------------------------------1----1-----------------1---------111----------1-1----------------1---------------1-------1-------------------------11----------------------------------------------11-----------------------------------------------------------------------------------1---------------------1-------------------------------------------------------1-------------------22222222---------------------------------------------------1----------------1--1----------1----112-2--2------11---1-11-------1-----11----------1-----------------------------------11--1-1----------1---1-------2-----1----------1--1----------1---1-------1-1-----------------1---1--------------------------------------------1------1----11111--1-------11--1-----------1--1--1----1------1------------------1--1-1----1------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 73 STR:RPRED 15.1 SQ:SECSTR ################################################################################################EcccccccccEEEEEcTTcE##EcHHHHHHHHTcHHHHHHHHHHHTTccccccHHHHTTcETTTEEccccccccc######################################################################################################################################################################################################################################################################################################################## PSIPRED cccccEEEEEEEEEEEEEccccccccccccccccEEEEEEEEEcccccEEccccccccccccHHccEEcccccEEEEEEccccccccccEEEEEcccccEEEEcccEEEEEEcccccccHHHHHHHHHcHHHHHHHHHcccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEHHEEEEEccccccccccccccccEEEEEEcccccccccccccccccccccEEcccccEEEEEEEcEEEEEEEcccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccHHHHHHHHHHccccccccc //