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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58287.1
DDBJ      :             Type I secretion membrane fusion protein, HlyD
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  332/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
b.82.1f.46.1
:455 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   353->415 1am2A PDBj 1e-04 42.9 %
:RPS:PDB   78->107 3bg3A PDBj 4e-04 16.7 %
:RPS:PDB   168->300 1bg1A PDBj 5e-04 12.8 %
:RPS:SCOP  77->122 1t5eA  f.46.1.1 * 4e-04 21.7 %
:RPS:SCOP  325->446 1x8mA  b.82.1.13 * 4e-11 13.7 %
:RPS:PFM   205->302 PF12128 * DUF3584 1e-04 23.5 %
:HMM:PFM   76->382 PF00529 * HlyD 2.3e-37 24.1 290/306  
:BLT:SWISS 75->455 PRTE_ERWCH 2e-51 31.3 %
:TM
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58287.1 GT:GENE ABA58287.1 GT:PRODUCT Type I secretion membrane fusion protein, HlyD GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2058831..2060198) GB:FROM 2058831 GB:TO 2060198 GB:DIRECTION - GB:PRODUCT Type I secretion membrane fusion protein, HlyD GB:PROTEIN_ID ABA58287.1 GB:DB_XREF GI:76883606 InterPro:IPR003997 InterPro:IPR006143 InterPro:IPR010129 LENGTH 455 SQ:AASEQ MENTPLPTLDIVPPWQEAITPSASDRQIPISDKYYRWLGMVILLLAFGGFGGWALTADLAVAVVATGAVSVESFKKTIQHLEGGIVEEIWVQDGDHVEAGSTLLILDKTRALSQLQIARMQYLTSGVARMRLLAEQQGAGSIEFSEALRHSHFPRVKEVLAVQKSLFQARREALAETLHGFDEQIVQMEEQIDGLQSMIKVSQSLAASLRVEAKDLRHLFKEGFVSNQRLRELERKILQIQGEVAQYHSEILRLRSKISENQTQKRLKQQEFQKEVGEQLRQAQANIAEAEERMSALNKQVKRTTITAPVTGTVVGMTVHTLGAVIHAGDPIMFIVPSGSGFVVEARIPDRDIDNIYAGQYAEIRFSAFNQRLTDVIEGEVVHISADAFEDEITGGRYYKARIKVTAAGKQNMSSNIQLLAGMPAEVMIRTGERTFASYVAKPIADMLARTIREE GT:EXON 1|1-455:0| BL:SWS:NREP 1 BL:SWS:REP 75->455|PRTE_ERWCH|2e-51|31.3|380/448| COIL:NAA 123 COIL:NSEG 3 COIL:REGION 168->209| COIL:REGION 226->260| COIL:REGION 263->308| TM:NTM 1 TM:REGION 44->66| SEG 43->71|lllafggfggwaltadlavavvatgavsv| SEG 310->323|vtgtvvgmtvhtlg| BL:PDB:NREP 1 BL:PDB:REP 353->415|1am2A|1e-04|42.9|63/181| RP:PDB:NREP 2 RP:PDB:REP 78->107|3bg3A|4e-04|16.7|30/679| RP:PDB:REP 168->300|1bg1A|5e-04|12.8|133/558| RP:PFM:NREP 1 RP:PFM:REP 205->302|PF12128|1e-04|23.5|98/1179|DUF3584| HM:PFM:NREP 1 HM:PFM:REP 76->382|PF00529|2.3e-37|24.1|290/306|HlyD| RP:SCP:NREP 2 RP:SCP:REP 77->122|1t5eA|4e-04|21.7|46/231|f.46.1.1| RP:SCP:REP 325->446|1x8mA|4e-11|13.7|117/259|b.82.1.13| OP:NHOMO 575 OP:NHOMOORG 335 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------1-1111121-2----------111------11---1------233----------------------1------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------4111----11-563421-1132----------2-336333333311444236245435211-12132122432111111111-21-41111111111111111111111111111111--1111-221-3--1131----11--111-1--1-212-----241-1-1-3232113-21332--111111-1211----2131134111--1---11-1--------11111---------------2--11112112-12-1-11211121111112224111--111-----------211--222-12----2---------2-1-----21--4424212111111111111111--1------211122212222--2-111--1111--112111------------11111211-1133333443225334-143---------131122222232344--1-------11111-4-------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------2---------11------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 227 STR:RPRED 49.9 SQ:SECSTR ############################################################################EEcccccccccccccccEEEEccccEEEccc############################################################HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccccTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccT####################################################GGGccTTcEEEEEGGGcccTHHHHHHHTcccTTHHHHHHHHHcTTEEEEEEEEEEEEEEEEEE######################################## DISOP:02AL 1-2, 175-186, 202-203, 246-262, 452-455| PSIPRED cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEcccEEEEEEEEEEEEccEEEEEcccccEEEEEEEccccEEEcccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEEEEEEEEEEccccEEccccEEEEEEEcccEEEEEEEEcHHHHHHcccccEEEEEEEEEccEEEcEEEEEEEEEEcccccccccccEEEEEEEEEcHHHHHHcccccEEEEccEEEEEEEEccEEHHHHHHHHHHHHHHHHcccc //