[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58296.1
DDBJ      :             Secretion protein HlyD
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  467/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
d.3.1d.41.2f.46.1
:406 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   54->372 2v4dB PDBj 3e-35 30.1 %
:RPS:PDB   36->126 1dxmA PDBj 3e-10 9.9 %
:RPS:PDB   202->345 3bsdA PDBj 5e-10 9.0 %
:RPS:SCOP  48->113 1qpnA2  d.41.2.1 * 9e-11 18.2 %
:RPS:SCOP  117->392 1iu4A  d.3.1.8 * 4e-35 7.2 %
:HMM:SCOP  47->300 1vf7A_ f.46.1.1 * 7.7e-59 40.5 %
:RPS:PFM   62->180 PF00529 * HlyD 5e-11 42.9 %
:HMM:PFM   61->359 PF00529 * HlyD 3e-39 25.8 295/306  
:BLT:SWISS 54->389 MDTA_PECCP 6e-35 29.4 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58296.1 GT:GENE ABA58296.1 GT:PRODUCT Secretion protein HlyD GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2076393..2077613) GB:FROM 2076393 GB:TO 2077613 GB:DIRECTION - GB:PRODUCT Secretion protein HlyD GB:PROTEIN_ID ABA58296.1 GB:DB_XREF GI:76883615 InterPro:IPR006143 LENGTH 406 SQ:AASEQ MIKSFFHAGVVAAIFLGLNGCNDPTPQLSEPPPPEVTVAHPIQREIVEWDYYTGRTEAAKTVEIRARVSGYLDEIAFEPGKIVEKGDLLFVIDQRPYQAVLAQARAGLKRARAQLTLAITELERAEQLVGRKLIAREEYDQRLAERQVAQAEVMEMQAAVESARLDLNFTEIRAPIGGRISRQLVDGGNLIIGGGEGNATLLAILVSIDPIYVYIDADERAVLKYRRLHQEGSRVSARYARILAQVGLATDKDFPFQGIIDYVAPRANPSTGTVRARIVIPNPDDQLSGGFFARVRIPGSGRYRATLITDRAISQDQGQKFVYVVNDENKVAYRRVELGPIVDGLRIVRAGLEPEERIIIKGVQRAREGIEVSPQLAPMTAPEASTQTSAKPLILEAGKEFSPGQG GT:EXON 1|1-406:0| BL:SWS:NREP 1 BL:SWS:REP 54->389|MDTA_PECCP|6e-35|29.4|326/413| COIL:NAA 31 COIL:NSEG 1 COIL:REGION 134->164| SEG 24->34|ptpqlsepppp| SEG 187->198|ggnliigggegn| BL:PDB:NREP 1 BL:PDB:REP 54->372|2v4dB|3e-35|30.1|302/327| RP:PDB:NREP 2 RP:PDB:REP 36->126|1dxmA|3e-10|9.9|91/131| RP:PDB:REP 202->345|3bsdA|5e-10|9.0|144/359| RP:PFM:NREP 1 RP:PFM:REP 62->180|PF00529|5e-11|42.9|119/259|HlyD| HM:PFM:NREP 1 HM:PFM:REP 61->359|PF00529|3e-39|25.8|295/306|HlyD| GO:PFM:NREP 3 GO:PFM GO:0008565|"GO:protein transporter activity"|PF00529|IPR006143| GO:PFM GO:0009306|"GO:protein secretion"|PF00529|IPR006143| GO:PFM GO:0016020|"GO:membrane"|PF00529|IPR006143| RP:SCP:NREP 2 RP:SCP:REP 48->113|1qpnA2|9e-11|18.2|66/115|d.41.2.1| RP:SCP:REP 117->392|1iu4A|4e-35|7.2|265/331|d.3.1.8| HM:SCP:REP 47->300|1vf7A_|7.7e-59|40.5|237/237|f.46.1.1|1/1|HlyD-like secretion proteins| OP:NHOMO 2121 OP:NHOMOORG 472 OP:PATTERN -------------------------------------------------------------------- 358--------------------------------------------------------------------------------1--2-7789-91-----39232C5736--------------21-1122212-3-------------------11------1-14--3--------------------1----------------------------------------1--------------------------------------------------------------------------------------------31-1-------1---1--------------211-311-11-------1-6435112---1168A89634DA69544654545656-9A7898A9-84-87755766765579233--711112112222222232223353---------------1--1------------14125663669989474554668777774788A6799-1555145548343435661859431111211357134-262124335444313337544552212322832111111111-1-------13--1--542771437514566663755666476565--16315------65442737778788877-7777888787787777778777543356655677777657556666454573-877777766777--2111-12565562645111---1--------3333324111647788A68B6676645661111111113466633333585448B758554542222--3-22--------------------------------------------------256 -------------------------------------------------------------------------------------------------------------------------------------------------------------------2-1-------1--------------3-----3---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 338 STR:RPRED 83.3 SQ:SECSTR ##################################EEEEcccTTcEEcTTcEEEEEEEcccEEEEEccccEEEEEEcTHHHHcTTHHHHcTTTTTccEEEEEccGGGGGccccHHHHHHHHHHHHHcHHHTTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEccccEEEccccccTTcEEcTTcTTccccccEEEEEEEEEEccTTccEEEEEEEEEEcccccccccEEEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEEEEccccEEEEEEEEEEETTEEEEEEEEEEEEEEEccccHHHHHHccccccccEEEEEEEEEEEEcEEEEEcTTccEEEEEEEEEEEETTccc################################## DISOP:02AL 1-3, 21-36, 373-406| PSIPRED ccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEEccEEEEEEEEEEEEEEEEEEEEEccccEEEEEEcccccEEEcccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccEEEEEEcccccEEcccccccccEEEEEEEccEEEEEEEEcHHHHHHHHHHHHcccccccccccEEEEEEEcccccEEEEEEEEEEEccccccccEEEEEEEEEccccccccccEEEEEEEEcccccEEEccHHHEEEccccEEEEEEccccEEEEEEEEEEEEcccEEEEEEccccccEEEEccHHHcccccEEEEEccccccccccccccccccccccccccccccc //