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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58302.1
DDBJ      :             DNA/RNA non-specific endonuclease
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  131/915 : Eukaryota  156/199 : Viruses  0/175   --->[See Alignment]
d.4.1
:294 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   130->275 1ql0A PDBj 2e-16 33.8 %
:RPS:SCOP  52->275 1g8tA  d.4.1.2 * 2e-40 27.5 %
:HMM:SCOP  46->288 1g8tA_ d.4.1.2 * 4.9e-49 31.7 %
:RPS:PFM   73->265 PF01223 * Endonuclease_NS 2e-21 35.5 %
:HMM:PFM   74->267 PF01223 * Endonuclease_NS 7.1e-36 31.2 189/204  
:BLT:SWISS 76->289 EXOG_DANRE 2e-20 32.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58302.1 GT:GENE ABA58302.1 GT:PRODUCT DNA/RNA non-specific endonuclease GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 2083338..2084222 GB:FROM 2083338 GB:TO 2084222 GB:DIRECTION + GB:PRODUCT DNA/RNA non-specific endonuclease GB:PROTEIN_ID ABA58302.1 GB:DB_XREF GI:76883621 InterPro:IPR001604 LENGTH 294 SQ:AASEQ MARQKKINPFQVFLTVWQLGRQRPLVLLLLVLTSGFWYGYELYIARPGMVYMGVPKAQNWKQPHTWTRIFRNDGFMVGYSDLRGNPLWVSYKVETIPDNAPYYKRPQRFSADWRNLTHIAHDDYRHSGYDRGHMAPNYAISRLYGEQAQLDTFLMTNITPQKPKLNQKLWQRLEEVEINHFTKRFKTIWVFTGPIFDPNIERLKSSYRVEIPDAFYKIYFAPSHEKMLAFIVKQEGVRGKEPLDKFLVSVDDVEKQTGFDFFHELEDTLEEQLESSTEPDPWQLKEVARLPARY GT:EXON 1|1-294:0| BL:SWS:NREP 1 BL:SWS:REP 76->289|EXOG_DANRE|2e-20|32.7|208/343| SEG 25->32|lvllllvl| BL:PDB:NREP 1 BL:PDB:REP 130->275|1ql0A|2e-16|33.8|142/241| RP:PFM:NREP 1 RP:PFM:REP 73->265|PF01223|2e-21|35.5|183/198|Endonuclease_NS| HM:PFM:NREP 1 HM:PFM:REP 74->267|PF01223|7.1e-36|31.2|189/204|Endonuclease_NS| GO:PFM:NREP 3 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01223|IPR001604| GO:PFM GO:0016787|"GO:hydrolase activity"|PF01223|IPR001604| GO:PFM GO:0046872|"GO:metal ion binding"|PF01223|IPR001604| RP:SCP:NREP 1 RP:SCP:REP 52->275|1g8tA|2e-40|27.5|211/241|d.4.1.2| HM:SCP:REP 46->288|1g8tA_|4.9e-49|31.7|230/241|d.4.1.2|1/1|His-Me finger endonucleases| OP:NHOMO 373 OP:NHOMOORG 287 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------------------------------------------1121-1-------11-11---------------------------11-1-------3-1-------------------123-1------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------11112111-------------------------------11111111-1-3-1-------------------------------------1---1------1------11-------1----211--1--1--132----------------------2-----------------1-11----3----11-------131111----------------11------1------------------------1------------------------------------------------------1111111111--1-111---------1--------1---------------1--1----------------1111111111--1111---1-------111111111111----------1-11--1-1--111--------------11111111----------------------------------------- ----112------1111111111111111-1111111111111111111111111111111111111111111-11111111111111-111111111111-1223-1-1715224-1----1-22-214E2-122111221223-22-12-111221111-1211-212-1135----5111-2----1---11111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 202 STR:RPRED 68.7 SQ:SECSTR ##########################################################################cEEEEETTTTEEEEEEEEEcGGccccccccccTTccTTcccccGGG##HHTTTTcEEEEcccGccHHHHTTcTTGGGGGcGGGEEEEEHHHHTTHHHHHHHHHHHHTTcTcccEEEEEEEEccccccccTTccccccccEEEEEEEcTTTccEEEEEEETTccTTcccGGGGcccHHHHHHHHTccccTTccHHHHHHHHTccc################ DISOP:02AL 1-6, 290-294| PSIPRED ccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccEEEEEcHHHccEEEEEEEEEccccccccccccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEcccccEEcccccEEccEEEEEEEEEccccEEEEEEEccccccccccHHHHcccHHHHHHHHcccHHHcccHHHHHHHHHcccccccccHHHHHccccc //