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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58320.1
DDBJ      :             MscS Mechanosensitive ion channel
Swiss-Prot:             

Homologs  Archaea  40/68 : Bacteria  419/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
b.38.1d.58.43f.34.1
:290 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   131->222 2vv5A PDBj 1e-08 27.2 %
:RPS:SCOP  43->126 2oauA3  f.34.1.1 * 9e-04 25.6 %
:RPS:SCOP  129->190 2oauA1  b.38.1.3 * 1e-15 32.3 %
:RPS:SCOP  197->282 2oauA2  d.58.43.1 * 2e-05 19.8 %
:HMM:SCOP  40->126 2oauA3 f.34.1.1 * 5.2e-08 33.3 %
:HMM:SCOP  127->193 2oauA1 b.38.1.3 * 1.2e-16 43.3 %
:HMM:SCOP  194->282 2oauA2 d.58.43.1 * 8.3e-07 17.9 %
:RPS:PFM   95->286 PF00924 * MS_channel 5e-24 33.2 %
:HMM:PFM   90->282 PF00924 * MS_channel 3.7e-39 25.7 191/207  
:HMM:PFM   50->114 PF03899 * ATP_synt_I 3.3e-05 21.9 64/100  
:BLT:SWISS 105->282 Y639_SYNY3 9e-19 31.8 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58320.1 GT:GENE ABA58320.1 GT:PRODUCT MscS Mechanosensitive ion channel GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 2105288..2106160 GB:FROM 2105288 GB:TO 2106160 GB:DIRECTION + GB:PRODUCT MscS Mechanosensitive ion channel GB:PROTEIN_ID ABA58320.1 GB:DB_XREF GI:76883639 InterPro:IPR006685 LENGTH 290 SQ:AASEQ MAEQNSIGSDAIQDLPQQIDYDLSMAVERFDSWVDGAIRLLPNIFLALVVMILFYGLAVLVRWLVQRQSIRRGRHNLGRMLGSFSKWAVILSGFLLAATIVLPTLNPGDLIAGLGVSSVAIGFAFKDILQNWLAGLLILLRQPFEVDDQIKVDSHEGTVEQIETRATIIKTYDGQRILIPNSYIYTHAVIVKTAYEKRRSQYDININYDNSANSIGETCERIRGAIAQVAEVETNPPPEALAWDLTEDKVTIRARWWTNSHRTNMSRVRAAVINAIRQVLDQSRTEPKPH GT:EXON 1|1-290:0| BL:SWS:NREP 1 BL:SWS:REP 105->282|Y639_SYNY3|9e-19|31.8|173/296| TM:NTM 3 TM:REGION 37->59| TM:REGION 84->106| TM:REGION 116->138| BL:PDB:NREP 1 BL:PDB:REP 131->222|2vv5A|1e-08|27.2|92/256| RP:PFM:NREP 1 RP:PFM:REP 95->286|PF00924|5e-24|33.2|190/203|MS_channel| HM:PFM:NREP 2 HM:PFM:REP 90->282|PF00924|3.7e-39|25.7|191/207|MS_channel| HM:PFM:REP 50->114|PF03899|3.3e-05|21.9|64/100|ATP_synt_I| GO:PFM:NREP 2 GO:PFM GO:0016020|"GO:membrane"|PF00924|IPR006685| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00924|IPR006685| RP:SCP:NREP 3 RP:SCP:REP 43->126|2oauA3|9e-04|25.6|82/86|f.34.1.1| RP:SCP:REP 129->190|2oauA1|1e-15|32.3|62/67|b.38.1.3| RP:SCP:REP 197->282|2oauA2|2e-05|19.8|81/101|d.58.43.1| HM:SCP:REP 40->126|2oauA3|5.2e-08|33.3|84/0|f.34.1.1|1/1|Mechanosensitive channel protein MscS (YggB), transmembrane region| HM:SCP:REP 127->193|2oauA1|1.2e-16|43.3|67/0|b.38.1.3|1/1|Sm-like ribonucleoproteins| HM:SCP:REP 194->282|2oauA2|8.3e-07|17.9|84/0|d.58.43.1|1/1|Mechanosensitive channel protein MscS (YggB), C-terminal domain| OP:NHOMO 702 OP:NHOMOORG 464 OP:PATTERN ---132-----------------142222255111111111121-221-22251111-121----1-1 -2---------------11-1----111111--------------1-----------------------------111---1-111----221-11----1313122212---------------4----1-1-13--------1-633343--2----1-1-2223131---------------1--11-------------------------------1-1-11111--------------------------1--1--1---11--1--------------------------------------------------------1-------2-2-1---11111----11-------11----11---1--3---1-----11---111-1-------------1-1111111112--12221211212221332321111121211111111---1---1------------------------------31---1-1-121111211-----111111111111311-----1-2331---21-23---1--111111111-2---3411-13131---1111122131-----1-111121-------1-------211-111221641314531222224322213132122---21-1--1---12121111111111111-111111111111111111111121--3111111111111111131111111--211111111111--11121121222143-22221-11----1--111111112232-22223132243441444---------13444-----1211112111111------1---------11111111----------------------------1--1-1-1-1--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1--------------1--1---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 92 STR:RPRED 31.7 SQ:SECSTR ##################################################################################################################################HHHHHHHHHTTccccTTcEEEccccEEEEEEEcccEEEEEcTTccEEEEEHHHHHTcccEEcccccEEEEEEEEEEcTTccHHHHHHHHHHH#################################################################### DISOP:02AL 1-5| PSIPRED ccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccEEEEEEEEEEEEEEEEEccccEEEEccHHHHcccEEEEccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHcccHHHcccccEEEEEEEcccEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccccc //