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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58381.1
DDBJ      :             transcription elongation factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  253/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.26.1
:129 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->121 3bmbA PDBj 3e-20 45.2 %
:RPS:PDB   7->121 3bmbA PDBj 5e-26 45.2 %
:RPS:SCOP  45->109 2etnA2  d.26.1.2 * 6e-16 38.5 %
:HMM:SCOP  40->119 1grjA2 d.26.1.2 * 8.6e-19 40.5 %
:RPS:PFM   45->107 PF01272 * GreA_GreB 2e-05 38.1 %
:HMM:PFM   43->116 PF01272 * GreA_GreB 1.1e-20 34.2 73/77  
:BLT:SWISS 7->121 RNK_SHIFL 8e-20 45.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58381.1 GT:GENE ABA58381.1 GT:PRODUCT transcription elongation factor GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2195239..2195628) GB:FROM 2195239 GB:TO 2195628 GB:DIRECTION - GB:PRODUCT transcription elongation factor GB:PROTEIN_ID ABA58381.1 GB:DB_XREF GI:76883700 InterPro:IPR001437 LENGTH 129 SQ:AASEQ MLKTSDLIITDLDYGRLRALGEQTLLAEELDRATVIPQERVPDRVVTMHSRLIYLDENTGERREVELVYPEEANTRAGKISVLAPVGSALLGLSVGESIDWKFPSGEVRRLSVEQILFQPQHDPVRADQ GT:EXON 1|1-129:0| BL:SWS:NREP 1 BL:SWS:REP 7->121|RNK_SHIFL|8e-20|45.2|115/136| BL:PDB:NREP 1 BL:PDB:REP 7->121|3bmbA|3e-20|45.2|115/135| RP:PDB:NREP 1 RP:PDB:REP 7->121|3bmbA|5e-26|45.2|115/135| RP:PFM:NREP 1 RP:PFM:REP 45->107|PF01272|2e-05|38.1|63/78|GreA_GreB| HM:PFM:NREP 1 HM:PFM:REP 43->116|PF01272|1.1e-20|34.2|73/77|GreA_GreB| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF01272|IPR001437| GO:PFM GO:0003711|"GO:transcription elongation regulator activity"|PF01272|IPR001437| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01272|IPR001437| RP:SCP:NREP 1 RP:SCP:REP 45->109|2etnA2|6e-16|38.5|65/79|d.26.1.2| HM:SCP:REP 40->119|1grjA2|8.6e-19|40.5|79/79|d.26.1.2|1/1|FKBP-like| OP:NHOMO 268 OP:NHOMOORG 254 OP:PATTERN -------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------1-2-11111-2-------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111-----1--------1-2--2----------1111-11-111-1-11111-32-1111-111-----------11-1---2-11111------------------2-------------------------------12---11--111111-1111111-1111-11111111--111-111111--1----11111--------11111-1-----11-------1-1112--111211111---------------------------11--1---11-11111-1-1111-1--1-----1111------1111-1-1111111111-1121111111111111111111111111111111111111111111-1111--111111111111---1----------1--1--------------------------111111211111111111--------------------1-111111111111--------11----------------------------------------------1----1- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 115 STR:RPRED 89.1 SQ:SECSTR ######cEEEHHHHHHHHHHHHcGGHHHHHHTcEEEcGGGccTTcccTTcEEEEEETTTccEEEEEEEcGGGcccTTTEEETTcHHHHHHTTccTTcEEEEEETTTEEEEEEEEEEEEcTT######## DISOP:02AL 1-3, 123-129| PSIPRED ccccccEEEEHHHHHHHHHHHHHHHHHHHHHccEEcccccccccEEccccEEEEEEcccccEEEEEEEccHHccccccEEEEEcHHHHHHHccccccEEEEEccccEEEEEEEEEEEEccccccccccc //