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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58408.1
DDBJ      :             Transposase IS200-like
Swiss-Prot:             

Homologs  Archaea  11/68 : Bacteria  117/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.58.57
:107 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->103 2ec2F PDBj 6e-20 37.6 %
:RPS:PDB   3->106 2ec2A PDBj 3e-20 37.9 %
:RPS:SCOP  5->107 2fyxA1  d.58.57.1 * 1e-18 25.2 %
:HMM:SCOP  1->106 2a6oA1 d.58.57.1 * 1e-28 40.4 %
:RPS:PFM   16->106 PF01797 * Transposase_17 5e-12 41.8 %
:HMM:PFM   12->107 PF01797 * Transposase_17 1.5e-30 36.5 96/121  
:BLT:SWISS 1->106 T200_SALTY 5e-26 46.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58408.1 GT:GENE ABA58408.1 GT:PRODUCT Transposase IS200-like GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 2231107..2231430 GB:FROM 2231107 GB:TO 2231430 GB:DIRECTION + GB:PRODUCT Transposase IS200-like GB:PROTEIN_ID ABA58408.1 GB:DB_XREF GI:76883727 InterPro:IPR002686 LENGTH 107 SQ:AASEQ MPDYKRLTHTKWGCKYHVVFIPKKRREWIYGNLRKYWGEIFRALATRRRVEIVEGPLMRDHVHICLNIPPKYSVSQVVGYLKGKSAIAIARRFRGKQRKFNGEHFWA GT:EXON 1|1-107:0| BL:SWS:NREP 1 BL:SWS:REP 1->106|T200_SALTY|5e-26|46.2|106/152| BL:PDB:NREP 1 BL:PDB:REP 3->103|2ec2F|6e-20|37.6|101/129| RP:PDB:NREP 1 RP:PDB:REP 3->106|2ec2A|3e-20|37.9|103/130| RP:PFM:NREP 1 RP:PFM:REP 16->106|PF01797|5e-12|41.8|91/119|Transposase_17| HM:PFM:NREP 1 HM:PFM:REP 12->107|PF01797|1.5e-30|36.5|96/121|Transposase_17| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF01797|IPR002686| GO:PFM GO:0004803|"GO:transposase activity"|PF01797|IPR002686| GO:PFM GO:0006313|"GO:transposition, DNA-mediated"|PF01797|IPR002686| RP:SCP:NREP 1 RP:SCP:REP 5->107|2fyxA1|1e-18|25.2|103/130|d.58.57.1| HM:SCP:REP 1->106|2a6oA1|1e-28|40.4|104/0|d.58.57.1|1/1|Transposase IS200-like| OP:NHOMO 885 OP:NHOMOORG 128 OP:PATTERN --1---1--111--17--------------3-----------------------------1-12---- ---------------------1------------------------------------------------2----------1----------------------------------------------------------------3-1-1-----------------1----------------1-----------------------38-----------1--------1-------1-12---12-432-1------------EE---1-----------22--1-2-----1--1---------------44321222----1---------1-A122-1-1-22------3211-1---1----1-------------------21---1--------------------1------------4------------1------------------------------------------B--------------------------------------------------------------------------------1--5---3-----1-1-----------3-1-------------------1-2----------1--------1---18-2-----13--------9---1-------------------J-1-2--------82----15---------1--8-7--6----4--Q6Q6-----------3*rm5***uF2E---------------------------------------------------------------------------H47447----------------------------------------------------------------------3-2-2--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 107 STR:RPRED 100.0 SQ:SECSTR ccccEEccccEEccEEEEEEcccccTTcccTHHHHHHHHHHHHHHHHHTcEEEEEEEETTEEEEEEEccTTccHHHHHHHHHHHHHHHHHHTTHHHHHTTTcccccc DISOP:02AL 1-6| PSIPRED cccccccccEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcEEEEEcccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc //