[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58431.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  11/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.102.3d.38.1
:760 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   159->476 3e7jA PDBj 4e-15 13.5 %
:RPS:SCOP  275->306 1z54A1  d.38.1.1 * 3e-04 12.5 %
:HMM:SCOP  213->347 1qazA_ a.102.3.1 * 8.1e-11 18.5 %
:RPS:PFM   407->482 PF07940 * Hepar_II_III 8e-10 46.0 %
:HMM:PFM   395->547 PF07940 * Hepar_II_III 1.6e-21 33.1 130/139  
:BLT:SWISS 570->739 RNPH_RHOPT 3e-04 29.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58431.1 GT:GENE ABA58431.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2257132..2259414) GB:FROM 2257132 GB:TO 2259414 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID ABA58431.1 GB:DB_XREF GI:76883750 LENGTH 760 SQ:AASEQ MKSVSSRFRSWFGRESAVPYCPTFSASRVIERKVGIDAEPAFFADPVSLRAAAEQVAAERPQWRGRLLERAYSDCSTGLITYGRRGDLLGKAFPWNSLTNGPGEDALYAARPHRFAFAPRLALAILYGAPLEFILAATLEGWMQVASAGCSKLPYLSNLVVIQRFIALSWALAFLIAKRGDASYSGRCSAVEHAVLKILYADARFLAPRLGNSYPNNHLLLDNFAGWYIGLLFPEFIEERGWLERYESLWLRELARQIYEDGTGFEHSTHYQEYTCEMTAAYVILSRRNNRPVPDWILERLKRMLAFQIDLSGPKTTPLAIGNGTEDPLFPLDIGEGWGCAAIRELYRALFDSSLSPSPYEDSAAERAFWLLGGELASSPVELKRSPRFKSYPVGGFFVFSEPDEGTRLVFRTGPATGKLLMGGHMHADLLGIYVSVAGNPMVVDGGTYTYRTQAERWPPDSPRWRAYFAGPEAHNGLSIRGVDPLGSLKRDFRDREVAARVATTRLTAGAVGAWVEGRIESQNAYDSYCRGVVHVLGEYWLVYDQLPEGISSDAASFGLQWVPGAKVERRSPHEICVVTNEESLGITFSEGLTPPQVLEGSLAPLGGWVSPHYGHLEAAPQIRTKCEGNRELTAFLLAAGRKPTETVSLQRMQGHQGGLAFRITCGERMDYLFLGPQEASPGIEAWGIRFEGVWLWLRTIAGVPTILRWLEGQSLQGEAMGLSLRAPARTPVLELRHSGAVLENPHGTLDGLSLCWPGS GT:EXON 1|1-760:0| BL:SWS:NREP 1 BL:SWS:REP 570->739|RNPH_RHOPT|3e-04|29.7|158/237| TM:NTM 2 TM:REGION 117->139| TM:REGION 156->177| SEG 109->122|aarphrfafaprla| SEG 498->514|vaarvattrltagavga| RP:PDB:NREP 1 RP:PDB:REP 159->476|3e7jA|4e-15|13.5|288/743| RP:PFM:NREP 1 RP:PFM:REP 407->482|PF07940|8e-10|46.0|63/136|Hepar_II_III| HM:PFM:NREP 1 HM:PFM:REP 395->547|PF07940|1.6e-21|33.1|130/139|Hepar_II_III| RP:SCP:NREP 1 RP:SCP:REP 275->306|1z54A1|3e-04|12.5|32/132|d.38.1.1| HM:SCP:REP 213->347|1qazA_|8.1e-11|18.5|130/0|a.102.3.1|1/1|Chondroitin AC/alginate lyase| OP:NHOMO 12 OP:NHOMOORG 11 OP:PATTERN -------------------------------------------------------------------- -12-----------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------1-------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------1-----------------1----------------------------------------1----------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 288 STR:RPRED 37.9 SQ:SECSTR ##############################################################################################################################################################HHHHHHHHHHHHHHHHT###GGGccHHHHHHHHHHHHHTTcTTccc###cccccccccGGGTHHHHTHHHHHTTcTHHHHHHHHHHHH###THHHHHHHHGGGcccccHHHHHHHHHHHHHHHHHHHHHHTTcccGGG#####GGTTHHHHHTccTTcccccccccccccccccc#######cHHHHHHHHHHHTcHHHHHHHHTcccccGGGHHHHHHHcccccccccGGGcTTTTcEEEEEccTTcEEEEEEcccccc####cTTccccTTcEEEEEccEEEccc#cccccTTccT####TcHHHHHTTTcGGGcc############################################################################################################################################################################################################################################################################################ DISOP:02AL 1-11| PSIPRED cccHHHHHHHHHHHHccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHccHHHcccEEEcccccccccccccccccccccHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccccHHHcccccEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEccEEEEEccccccccccccccccccHHHHHHHcccEEccEEEEccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHccccccccEEEEEccEEEEEEEEcccccccEEEEEEEEcccEEEEEEcccEEEEEEcccEEEEEEccccccHHHHccccccccccccccccccccccEEEEEEccccEEEEEEEEccccccccEEEEEEEEEccccEEEEEEccccHHEEEcHHHHcccHHHHcEEEHHHHHHHHHHHcHHHHHHHHccccccccccEEEEEccccccHHHHHccccEEEcccccccccEEEcccc //