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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58483.1
DDBJ      :             Ribonuclease H
Swiss-Prot:RNH2_NITOC   RecName: Full=Ribonuclease HII;         Short=RNase HII;         EC=3.1.26.4;

Homologs  Archaea  18/68 : Bacteria  857/915 : Eukaryota  23/199 : Viruses  1/175   --->[See Alignment]
c.55.3
:201 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->199 2etjA PDBj 1e-25 46.1 %
:RPS:PDB   16->200 2dffA PDBj 1e-53 27.6 %
:RPS:SCOP  17->200 2etjA1  c.55.3.1 * 5e-56 47.6 %
:HMM:SCOP  15->200 2etjA1 c.55.3.1 * 1.1e-64 53.8 %
:RPS:PFM   18->194 PF01351 * RNase_HII 4e-37 51.1 %
:HMM:PFM   18->195 PF01351 * RNase_HII 6.2e-52 44.6 177/198  
:BLT:SWISS 1->201 RNH2_NITOC e-102 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58483.1 GT:GENE ABA58483.1 GT:PRODUCT Ribonuclease H GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2334508..2335113) GB:FROM 2334508 GB:TO 2335113 GB:DIRECTION - GB:PRODUCT Ribonuclease H GB:PROTEIN_ID ABA58483.1 GB:DB_XREF GI:76883802 InterPro:IPR001352 LENGTH 201 SQ:AASEQ MLLDGGILSTSVLGQRVAGVDEVGRGPLAGPVIAGAVILDPECPISGVKDSKQLTAPARERLAALIQAQAVAWALGRAEAAEIDQFNILQASLLAMERAISALSVVPDLVLVDGKHCPPTVCPVRAIVKGDQQIMAIGAASIVAKVARDAEMIAFEESYPGYGFGIHKGYPTRAHLAALKALGPCSIHRRSFRPVRRFLEA GT:EXON 1|1-201:0| SW:ID RNH2_NITOC SW:DE RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; SW:GN Name=rnhB; OrderedLocusNames=Noc_2022; SW:KW Complete proteome; Cytoplasm; Endonuclease; Hydrolase; Manganese;Metal-binding; Nuclease. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->201|RNH2_NITOC|e-102|100.0|201/201| GO:SWS:NREP 5 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0004519|"GO:endonuclease activity"|Endonuclease| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0004518|"GO:nuclease activity"|Nuclease| SEG 62->75|laaliqaqavawal| BL:PDB:NREP 1 BL:PDB:REP 17->199|2etjA|1e-25|46.1|165/206| RP:PDB:NREP 1 RP:PDB:REP 16->200|2dffA|1e-53|27.6|185/210| RP:PFM:NREP 1 RP:PFM:REP 18->194|PF01351|4e-37|51.1|176/190|RNase_HII| HM:PFM:NREP 1 HM:PFM:REP 18->195|PF01351|6.2e-52|44.6|177/198|RNase_HII| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF01351|IPR001352| GO:PFM GO:0004523|"GO:ribonuclease H activity"|PF01351|IPR001352| RP:SCP:NREP 1 RP:SCP:REP 17->200|2etjA1|5e-56|47.6|170/211|c.55.3.1| HM:SCP:REP 15->200|2etjA1|1.1e-64|53.8|182/0|c.55.3.1|1/1|Ribonuclease H-like| OP:NHOMO 926 OP:NHOMOORG 899 OP:PATTERN ------111111111--1----------------1--------1----------1111-11------- 1111111111111111111-111111111111111111111111111-1111111--1--111111111111------1111-111111111-1112--1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-------1-11111111111111211111112111111111111111-111111111112111111111111111111111-1111211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111111111111111111111111-12111111111111111111111111111111111111111111111111111111111--11111------11111111111111111-1111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111211111111111111111111111111111111111111111111111--11111111111111111-1----1-1-1-1-----111------1111111111111 --------211-------------------------------------------------------------------------------------------------1-------------------------------------------------------------5----1111A1111-2-----12221111 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-- STR:NPRED 186 STR:RPRED 92.5 SQ:SECSTR ##############EEEEEEEEEccccccccEEEEEEEEETTTHTTTGGGGccccHHHHHHHHHHHHTTccEEEEEEEcHHHHTTccHHHHHHHHHHHHHTTccccccEEEEEEccccHHHcEEEEEETcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccTTccTTcHHHHHHHHHHHTccccTTccTTcTHHHHHHH# DISOP:02AL 201-202| PSIPRED ccccccccccccccEEEEEEEccccccccccEEEEEEEEcccccccccccHHcccHHHHHHHHHHHHHHccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccEEEcccHHHHHHHcc //