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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58520.1
DDBJ      :             transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  164/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:235 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->49 2qlzD PDBj 4e-04 40.5 %
:RPS:PDB   11->62 1bibA PDBj 3e-10 17.3 %
:RPS:SCOP  13->62 1z6rA1  a.4.5.63 * 6e-09 16.0 %
:HMM:SCOP  13->208 2p4wA1 a.4.5.64 * 5.1e-27 31.7 %
:RPS:PFM   15->60 PF08220 * HTH_DeoR 2e-04 37.0 %
:HMM:PFM   12->59 PF01047 * MarR 3e-09 35.4 48/59  
:BLT:SWISS 11->123 CCPN_BACSU 6e-05 28.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58520.1 GT:GENE ABA58520.1 GT:PRODUCT transcriptional regulator GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 2368933..2369640 GB:FROM 2368933 GB:TO 2369640 GB:DIRECTION + GB:PRODUCT transcriptional regulator GB:PROTEIN_ID ABA58520.1 GB:DB_XREF GI:76883839 InterPro:IPR000835 LENGTH 235 SQ:AASEQ MRPTATLLESLPETQGEILRYLKAQGSTTLAGLADRLNLTREAVRQHLATLQEEGWIQRVGRLKSLSQGRPAAVFALTPAGDHLFPKFYDSLSLEFLDTLADNFGEEAVRTLLAALTDKQVARWETKLRGLSLPERIEALTGIYFEQDPYTHVEQDERGYLLVERNCPYLNLALQRPQLCSVTLATLSRLLGVRVRREAKFQEGDRHCAFRVLADQPLEPDYRFSFETESPFHRD GT:EXON 1|1-235:0| BL:SWS:NREP 1 BL:SWS:REP 11->123|CCPN_BACSU|6e-05|28.3|113/212| BL:PDB:NREP 1 BL:PDB:REP 8->49|2qlzD|4e-04|40.5|42/208| RP:PDB:NREP 1 RP:PDB:REP 11->62|1bibA|3e-10|17.3|52/294| RP:PFM:NREP 1 RP:PFM:REP 15->60|PF08220|2e-04|37.0|46/56|HTH_DeoR| HM:PFM:NREP 1 HM:PFM:REP 12->59|PF01047|3e-09|35.4|48/59|MarR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF08220|IPR001034| GO:PFM GO:0005622|"GO:intracellular"|PF08220|IPR001034| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08220|IPR001034| RP:SCP:NREP 1 RP:SCP:REP 13->62|1z6rA1|6e-09|16.0|50/57|a.4.5.63| HM:SCP:REP 13->208|2p4wA1|5.1e-27|31.7|180/0|a.4.5.64|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 183 OP:NHOMOORG 172 OP:PATTERN --------11111------------------------------------------------111---- ----1111111--111-----111-1-------11111--1-----1-1---1--1------11111--11----------------------------------2-121--------------------------22222---11111111111--11-11-11--2111-1-----1----111------1-11111111111111111----111-------------31----------------------------------------------------------------------------------------------------------------------1---------------------1----------------------------------1-----------1-1----1-11----11----------------------------------------------------------------1111-------1111----1111-1---------------------1--1--------------11---------------------------------------------------------------11----1----11111--111111111111---1----------------------------------------------------------------------2---------111111111111---------------1----------------------------------1------------------------11111111111----------------------------------------------------------------------1-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 118 STR:RPRED 50.2 SQ:SECSTR HHHHHHHHHTccHHHHHHHHHHTTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcccEEETccEEccEETTTEEEcccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHc##################################################################################################################### DISOP:02AL 1-12, 126-131, 220-235| PSIPRED ccHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEccccccccccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccEEEEcccEEEEEEccccHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEccccccHHHHHHccccccccc //