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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58526.1
DDBJ      :             RpoD
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  908/915 : Eukaryota  22/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13
:579 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   321->577 3dxjF PDBj 7e-63 53.7 %
:RPS:PDB   324->491 3blvH PDBj 4e-34 15.8 %
:RPS:SCOP  111->412 1sigA  a.177.1.1 * 3e-55 40.1 %
:RPS:SCOP  416->474 1iw7F1  a.4.13.1 * 6e-14 45.8 %
:RPS:SCOP  518->566 1ku3A  a.4.13.2 * 5e-11 53.1 %
:HMM:SCOP  110->412 1sigA_ a.177.1.1 * 1.2e-91 40.9 %
:HMM:SCOP  418->492 1rp3A1 a.4.13.1 * 9.9e-18 44.0 %
:HMM:SCOP  475->579 1iw7F2 a.4.13.2 * 5.2e-22 37.1 %
:RPS:PFM   2->74 PF03979 * Sigma70_r1_1 5e-04 31.9 %
:RPS:PFM   138->313 PF04546 * Sigma70_ner 1e-04 24.0 %
:RPS:PFM   345->405 PF04542 * Sigma70_r2 2e-08 42.6 %
:RPS:PFM   424->497 PF04539 * Sigma70_r3 6e-14 43.2 %
:RPS:PFM   520->565 PF04545 * Sigma70_r4 9e-06 57.1 %
:HMM:PFM   134->182 PF04546 * Sigma70_ner 5e-09 32.7 49/211  
:HMM:PFM   179->314 PF04546 * Sigma70_ner 3.8e-29 27.2 136/211  
:HMM:PFM   345->415 PF04542 * Sigma70_r2 7.9e-26 38.0 71/71  
:HMM:PFM   424->500 PF04539 * Sigma70_r3 2.6e-24 45.5 77/78  
:HMM:PFM   513->566 PF04545 * Sigma70_r4 2.4e-20 48.0 50/50  
:HMM:PFM   92->125 PF00140 * Sigma70_r1_2 7.8e-15 52.9 34/37  
:HMM:PFM   4->74 PF03979 * Sigma70_r1_1 5e-07 30.0 70/82  
:BLT:SWISS 7->579 RPOD_SALTY e-121 43.6 %
:PROS 369->382|PS00715|SIGMA70_1
:PROS 538->564|PS00716|SIGMA70_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58526.1 GT:GENE ABA58526.1 GT:PRODUCT RpoD GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 2376951..2378690 GB:FROM 2376951 GB:TO 2378690 GB:DIRECTION + GB:PRODUCT RpoD GB:PROTEIN_ID ABA58526.1 GB:DB_XREF GI:76883845 InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042 LENGTH 579 SQ:AASEQ MDFEMRQEELKRLILKGKAQGLLTEEELQDYIIQEVEDSDEAETMAHLFHHHQGLDEFNEALDSTLLLKNSSEEEIAETLPTLEGESTGAVSDMVYAYMREMGAHALLTREEEITLAKAIETGLSQSTEALGNCPAAVAELVRWAEEVATGKGRLKDWLTGFTEPEIEETEIKDGKESSLEATSKHLSRVRTLYGNLEATLAQEGVASPRARELRRKLAREFQFLRLIPSRINQLTQLVQGWISKAQTQEQIIRSCCIHQGEMSQEDFWHNFSSGTTHPQWLDDLLAHSRIDRQGLQTQAKTLRAAQAVLLQVEVEAGLPLDELKAIHQRLVRSQFQAQRAKAQMVEANLRLVVSVAKKYRNRGLTFLDLIQEGNIGLMKAVDKFDYHRGYKFSTYAHWWIRQAITRAIDDQSRTIRIPVHVMEKLSKLNRASYQLRQEKGREGRPEELAERLALSEQQIHRMHEIAKQPISLETPLGKDEDSQLGELMEDEQVPNPMEVAITAGLQTGAQQLLAALSPREAQVVAMRFGIGMDTDHTLGEVAQQFDLSRERIRQIEAQALGKLRRLGHSKALRNFLED GT:EXON 1|1-579:0| BL:SWS:NREP 1 BL:SWS:REP 7->579|RPOD_SALTY|e-121|43.6|571/615| PROS 369->382|PS00715|SIGMA70_1|PDOC00592| PROS 538->564|PS00716|SIGMA70_2|PDOC00592| SEG 210->221|rarelrrklare| SEG 503->517|taglqtgaqqllaal| BL:PDB:NREP 1 BL:PDB:REP 321->577|3dxjF|7e-63|53.7|257/349| RP:PDB:NREP 1 RP:PDB:REP 324->491|3blvH|4e-34|15.8|165/345| RP:PFM:NREP 5 RP:PFM:REP 2->74|PF03979|5e-04|31.9|72/83|Sigma70_r1_1| RP:PFM:REP 138->313|PF04546|1e-04|24.0|175/209|Sigma70_ner| RP:PFM:REP 345->405|PF04542|2e-08|42.6|61/70|Sigma70_r2| RP:PFM:REP 424->497|PF04539|6e-14|43.2|74/78|Sigma70_r3| RP:PFM:REP 520->565|PF04545|9e-06|57.1|42/49|Sigma70_r4| HM:PFM:NREP 7 HM:PFM:REP 134->182|PF04546|5e-09|32.7|49/211|Sigma70_ner| HM:PFM:REP 179->314|PF04546|3.8e-29|27.2|136/211|Sigma70_ner| HM:PFM:REP 345->415|PF04542|7.9e-26|38.0|71/71|Sigma70_r2| HM:PFM:REP 424->500|PF04539|2.6e-24|45.5|77/78|Sigma70_r3| HM:PFM:REP 513->566|PF04545|2.4e-20|48.0|50/50|Sigma70_r4| HM:PFM:REP 92->125|PF00140|7.8e-15|52.9|34/37|Sigma70_r1_2| HM:PFM:REP 4->74|PF03979|5e-07|30.0|70/82|Sigma70_r1_1| GO:PFM:NREP 23 GO:PFM GO:0003677|"GO:DNA binding"|PF03979|IPR007127| GO:PFM GO:0030528|"GO:transcription regulator activity"|PF03979|IPR007127| GO:PFM GO:0045449|"GO:regulation of transcription"|PF03979|IPR007127| GO:PFM GO:0003677|"GO:DNA binding"|PF04546|IPR007631| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04546|IPR007631| GO:PFM GO:0006352|"GO:transcription initiation"|PF04546|IPR007631| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04546|IPR007631| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04546|IPR007631| GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| GO:PFM GO:0003677|"GO:DNA binding"|PF04539|IPR007624| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04539|IPR007624| GO:PFM GO:0006352|"GO:transcription initiation"|PF04539|IPR007624| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04539|IPR007624| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04539|IPR007624| GO:PFM GO:0003677|"GO:DNA binding"|PF04545|IPR007630| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04545|IPR007630| GO:PFM GO:0006352|"GO:transcription initiation"|PF04545|IPR007630| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04545|IPR007630| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04545|IPR007630| RP:SCP:NREP 3 RP:SCP:REP 111->412|1sigA|3e-55|40.1|297/305|a.177.1.1| RP:SCP:REP 416->474|1iw7F1|6e-14|45.8|59/61|a.4.13.1| RP:SCP:REP 518->566|1ku3A|5e-11|53.1|49/61|a.4.13.2| HM:SCP:REP 110->412|1sigA_|1.2e-91|40.9|303/0|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 418->492|1rp3A1|9.9e-18|44.0|75/0|a.4.13.1|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 475->579|1iw7F2|5.2e-22|37.1|105/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 2661 OP:NHOMOORG 930 OP:PATTERN -------------------------------------------------------------------- 1123722222222233322-26222322222234447465433431111222121111113372664BCB51111111211372244411111111111111112211142222222222111111-1111111115555611155R7967755688666879665789B757555557555532-1111234644444445334445444555644435434122222225511111111111111121111111211211111111111111111111111111111111111111111111111111111111111111155554444445445446443333654324554433464534544455112326222433333224222232223233333333333-33334333333232233333333322233333333333322222222222223432222222222222222222222222222222232222222555565344545544444434556555522222222112223324334222342222222223334332232333233332445443435556557231111111111111111111111111554334444444354444443444444434332-2533422222243333434446444444-44444343444443443343333333334444444444444444424324421333333333333223233333333322433222222222222222222222222234333333353333343332222222223544533333434332222222222222222442211112222222232111111-11111111111111111112131111111231 -------1----------------------------------------------------------------------------------------------------4------------------------------------------------------------------4212K12233668B-64871---6 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 488 STR:RPRED 84.3 SQ:SECSTR ###########################################################################################cHHHHHHHHHHTTcccccHcTHHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHTTTTTTcccGGGTEEEEcccccccccTTTTccccTTTTcccHHHHHHHHHHHHHHHHHHHTccHHHHHHHHHHHHHHTTEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccHHHHHHHHTTTcccGGGTHHHHTTccHHHHHHHHHHHHHHHTTccEEEEEcHHHHHHHTccccccccccccHHHHHHHTTTEEEEEEEEEccTTccccccccEEEEEEEccccTTcccEEEEETEEEEcccccHHHHHHHHHHHHHHHHHTTccEEEEEEcTTTcHHHHHHHHHHHHHHHHTTcTTcEEEEEEHHHHHHHHHHHcGGGGTTccTEEEcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHTTTTccTTcHHHHHHHTTcccHHHHHHHHHHHHHHHHHTTTcccGGGcccc DISOP:02AL 1-6, 8-9, 59-88, 170-183, 200-212, 578-579| PSIPRED ccHHHHHHHHHHHHHHccccccccHHHHHHHcccccccHHHHHHHHHHHHcccccEEccccccccHHHHccccccHHHHHHccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccEEccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHccccEEEccccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //