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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58580.1
DDBJ      :             bacterial translation initiation factor 2 (bIF-2)
Swiss-Prot:IF2_NITOC    RecName: Full=Translation initiation factor IF-2;

Homologs  Archaea  68/68 : Bacteria  912/915 : Eukaryota  197/199 : Viruses  0/175   --->[See Alignment]
a.6.1b.43.3c.20.1c.37.1
:845 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   346->837 1zo1I PDBj 0.0 69.5 %
:RPS:PDB   350->837 1darA PDBj 1e-59 14.7 %
:RPS:SCOP  272->317 1nd9A  a.6.1.6 * 2e-17 10.9 %
:RPS:SCOP  346->509 1g7rA4  c.37.1.8 * 1e-40 35.9 %
:RPS:SCOP  487->609 1n0uA1  b.43.3.1 * 8e-16 12.4 %
:RPS:SCOP  626->748 1g7rA3  c.20.1.1 * 4e-21 26.3 %
:RPS:SCOP  746->842 1d1nA  b.43.3.1 * 7e-25 45.4 %
:HMM:SCOP  2->51 1nd9A_ a.6.1.6 * 3.4e-11 57.1 %
:HMM:SCOP  342->536 1f60A3 c.37.1.8 * 1e-60 41.0 %
:HMM:SCOP  517->601 1g7sA1 b.43.3.1 * 3.8e-25 57.6 %
:HMM:SCOP  621->752 1g7sA3 c.20.1.1 * 1.2e-36 46.4 %
:HMM:SCOP  746->844 1d1nA_ b.43.3.1 * 7.6e-33 47.5 %
:RPS:PFM   63->101 PF08364 * IF2_assoc 2e-07 59.0 %
:RPS:PFM   270->319 PF04760 * IF2_N 1e-09 52.0 %
:RPS:PFM   350->504 PF00009 * GTP_EFTU 1e-17 39.2 %
:RPS:PFM   632->735 PF11987 * IF-2 7e-25 51.9 %
:HMM:PFM   348->507 PF00009 * GTP_EFTU 6.4e-44 38.1 160/189  
:HMM:PFM   629->735 PF11987 * IF-2 1.2e-41 57.0 107/109  
:HMM:PFM   1->51 PF04760 * IF2_N 1.3e-05 23.5 51/54  
:HMM:PFM   269->320 PF04760 * IF2_N 5.2e-20 42.3 52/54  
:HMM:PFM   62->102 PF08364 * IF2_assoc 1.7e-20 61.0 41/41  
:HMM:PFM   535->595 PF03144 * GTP_EFTU_D2 3.5e-10 39.3 61/74  
:HMM:PFM   766->833 PF03144 * GTP_EFTU_D2 1.7e-09 28.4 67/74  
:BLT:SWISS 1->105,174->845 IF2_NITOC 0.0 100.0 %
:PROS 796->818|PS01176|IF2
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58580.1 GT:GENE ABA58580.1 GT:PRODUCT bacterial translation initiation factor 2 (bIF-2) GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2440865..2443402) GB:FROM 2440865 GB:TO 2443402 GB:DIRECTION - GB:PRODUCT bacterial translation initiation factor 2 (bIF-2) GB:PROTEIN_ID ABA58580.1 GB:DB_XREF GI:76883899 InterPro:IPR000178 InterPro:IPR000795 InterPro:IPR002917 InterPro:IPR004161 InterPro:IPR005225 InterPro:IPR006847 LENGTH 845 SQ:AASEQ MSEVTVRQLADVVGTPVGRLLEQLREAGIGVDREDAAITEAQKLQLLRYLRHSHGASVEIATPKRITLNRRSHSEIQVNAGGGRSKTVNVEVRKKRTYIKRSAILEQERLAERQREEEEAQAGVQAQQEREARLIAEEEAKRQAAEEEAKRQAAEEEAKRQAAEEEAKRQAEAQVKRRLDVEKKPKNGLEPARTEKPASRKAKPRFRSEDRESEQKQRGTKFGRKELHIAPGKAGTSKRKKFRPQKAAPAAKHGFERPTAPIVHDVSIPETMTVAELAQKMSVKAAEVIKALMKLGIMATINQVLDQDTATIVVEEMGHKPKRLQENTLELELVQAEQEVSRQVSRAAVVTIMGHVDHGKTSLLDYIRRAKVATSEAGGITQHIGAYKVRSDKGEITFIDTPGHAAFTAMRARGAKVTDIVILVVAADDGAMPQTVEAIQHARAAGAPLVVAVNKIDRPDADPDRVKQELANHDVITEEWGGDTQFVNVSAKTGEGIDDLIEAILLQAEVMEIKVSAEGPARGVVIESRLDKGRGPVATILVQSGTLRKGDILLSGVETGRVRAMLTERGQEIIEAGPSTPVEILGLSGTPNAGDEAVVVPDERRAREIAGHRQAKEREVKLARQQSAKLENMFNEMEEGEIRALNLVIKADVQGSAEALSDSLTKLSTDKARVKVVAAGVGGINETDVNLAVASNAVIIGFNVRADAAARRLIAEKGIDLHYYSVIYNAIDEIKGALIGILDPEYREEIIGLARVDDVFRSPKLGAIAGCLVIEGSVRRNNPIRVLRDNIVVFEGQLESLRRFKDDVQEVRAGTECGIGVKDYKDVKVGDQIEVYERVRKEPAL GT:EXON 1|1-845:0| SW:ID IF2_NITOC SW:DE RecName: Full=Translation initiation factor IF-2; SW:GN Name=infB; OrderedLocusNames=Noc_2120; SW:KW Complete proteome; Cytoplasm; GTP-binding; Initiation factor;Nucleotide-binding; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->105,174->845|IF2_NITOC|0.0|100.0|777/845| GO:SWS:NREP 5 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0005525|"GO:GTP binding"|GTP-binding| GO:SWS GO:0003743|"GO:translation initiation factor activity"|Initiation factor| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| PROS 796->818|PS01176|IF2|PDOC00905| COIL:NAA 53 COIL:NSEG 1 COIL:REGION 124->176| SEG 106->173|eqerlaerqreeeeaqagvqaqqerearliaeeeakrqaaeeeakrqaaeeeakrqaaeeeakrqaea| SEG 329->340|lelelvqaeqev| SEG 671->683|karvkvvaagvgg| BL:PDB:NREP 1 BL:PDB:REP 346->837|1zo1I|0.0|69.5|492/501| RP:PDB:NREP 1 RP:PDB:REP 350->837|1darA|1e-59|14.7|482/615| RP:PFM:NREP 4 RP:PFM:REP 63->101|PF08364|2e-07|59.0|39/41|IF2_assoc| RP:PFM:REP 270->319|PF04760|1e-09|52.0|50/52|IF2_N| RP:PFM:REP 350->504|PF00009|1e-17|39.2|153/183|GTP_EFTU| RP:PFM:REP 632->735|PF11987|7e-25|51.9|104/111|IF-2| HM:PFM:NREP 7 HM:PFM:REP 348->507|PF00009|6.4e-44|38.1|160/189|GTP_EFTU| HM:PFM:REP 629->735|PF11987|1.2e-41|57.0|107/109|IF-2| HM:PFM:REP 1->51|PF04760|1.3e-05|23.5|51/54|IF2_N| HM:PFM:REP 269->320|PF04760|5.2e-20|42.3|52/54|IF2_N| HM:PFM:REP 62->102|PF08364|1.7e-20|61.0|41/41|IF2_assoc| HM:PFM:REP 535->595|PF03144|3.5e-10|39.3|61/74|GTP_EFTU_D2| HM:PFM:REP 766->833|PF03144|1.7e-09|28.4|67/74|GTP_EFTU_D2| GO:PFM:NREP 4 GO:PFM GO:0003743|"GO:translation initiation factor activity"|PF04760|IPR006847| GO:PFM GO:0006413|"GO:translational initiation"|PF04760|IPR006847| GO:PFM GO:0003924|"GO:GTPase activity"|PF00009|IPR000795| GO:PFM GO:0005525|"GO:GTP binding"|PF00009|IPR000795| RP:SCP:NREP 5 RP:SCP:REP 272->317|1nd9A|2e-17|10.9|46/49|a.6.1.6| RP:SCP:REP 346->509|1g7rA4|1e-40|35.9|156/212|c.37.1.8| RP:SCP:REP 487->609|1n0uA1|8e-16|12.4|121/138|b.43.3.1| RP:SCP:REP 626->748|1g7rA3|4e-21|26.3|118/131|c.20.1.1| RP:SCP:REP 746->842|1d1nA|7e-25|45.4|97/99|b.43.3.1| HM:SCP:REP 2->51|1nd9A_|3.4e-11|57.1|49/49|a.6.1.6|1/2|Putative DNA-binding domain| HM:SCP:REP 342->536|1f60A3|1e-60|41.0|195/239|c.37.1.8|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 517->601|1g7sA1|3.8e-25|57.6|85/101|b.43.3.1|1/2|Translation proteins| HM:SCP:REP 621->752|1g7sA3|1.2e-36|46.4|125/131|c.20.1.1|1/1|Initiation factor IF2/eIF5b, domain 3| HM:SCP:REP 746->844|1d1nA_|7.6e-33|47.5|99/99|b.43.3.1|2/2|Translation proteins| OP:NHOMO 4983 OP:NHOMOORG 1177 OP:PATTERN 11111111222222221111111111111111122322222222211111221211121121121111 5663644444344444444-4444454444444555444434444454455444454444444445565454666454455555354533323333422334443444543333333434444444444444444455555334644335554443344454434544444444544444544446444453255555555544565555455545554444355444444555433333333334333334445455554645664455554444444655533333333344434434433444444343435544474544544566666663634455544455455444555564534655556354534633356555555444445545555555555555615565555655555555555555566544455555655554444444444444555665555552344444444444444455554444547666644454466666664566665644433434544533333444533433264234555554555533646576634564445666666666566665667555454444444443444445354322445343533345565645666555565545313333533333344334434444444444-44444444444444444454443444344444444443444444444443333434344434444334355555333343552665646466654554333233333355777755645555664433333333334333333333333337755555555555522545556553334344443433334-33433333333333333333233333333344 5511656-H6514544443344454544433333443333243444344444443444455544555335416555524646555334-555456444445344552586A5643463322233992327J413453312423534231241163654248A56654A76M44667687*A8678B8AD3CA66B5667 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 644 STR:RPRED 76.2 SQ:SECSTR #########################################################################################################################################################################################################HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccTHHHHHHHTEEEEEEEccTTccHHHHHHHHHHHTTccccHHHHHTTHHHHHHHHHHHHHHHHHHHHHTcccccTTHHHHHHHHHHHHTTccccHHHHcHHHHHHHTTTTTccccEEEEEEcTTccHHHHHHHHHHHHccccEEEEEETTEEEEEEcccccTTEEcTTcTTccHHHHHHHHHHTTcccEEEcEEEEccGGEEETTTTEEEEEccTTcccEEEEcccGGGHHHHHHHHHHHHHHHTTTTccEEEEEccGGGTccHHHHHHHHHccccEEEEcccTTcccEEEEEEEEEETTTEEEEEEEEEEcEEEcccEEEETEEccEEEEEccccEEEEcEEETTcEEEEEcccTcccTTcEEEETTcccccccccccccEEEccEEEEEcccccccEEEcTTTcccccccEEEccccEEEEEEEEEccccccEEEEEEEEEEEccTTccEEHHHHHHHTTccTTTccccccEEEEEEEEcccTTTccHHHHHHHHHHHHHHHHHTcccEEEEEEEEEEEEEcTTTTTHHHHHHHHTTccEEEEEEETTEEEEEEEEccEEEETTTcccHHHHHHHHTTTcEEEEEEEEEEEccHHHHHHHHcEEcccccc DISOP:02AL 1-2, 43-265, 281-286, 330-344, 629-632| PSIPRED cccccHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccEEEEccccccccccccEEccccccccccccHHHHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEcccccHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHcccHHHcccEEEEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHcEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHcccccccccccEEEccccccccHHHHHHHHHHHHHccccccccccccEEEEEEEEEEcccEEEEEEEEEEcEEccccEEEEccccEEEEEEEccccEEEEEcccccccEEEEcccHHHcccEEEEEcccccHHHccccHHHHHHHHHHHHHccccHHHHHHHHccccccEEccEEEccccHHHHHHHHHHHHcccccEEEEEEEcccccccHHHHHHHcccccEEEEEEccccHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHHHcccEEEEEEccEEEEEEEEEcccccEEEEEEEEEEEEEcccEEEEEEccEEEEEEEEHHHHHccccHHHHHcccEEEEEEEcccccccccEEEEEEEEEEcccc //