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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58581.1
DDBJ      :             NusA antitermination factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  909/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
a.60.3a.60.4b.40.4d.202.1d.52.3
:506 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->341 1hh2P PDBj 1e-66 38.9 %
:BLT:PDB   362->428 1wclA PDBj 8e-15 50.7 %
:BLT:PDB   436->496 1wcnA PDBj 2e-12 52.5 %
:RPS:PDB   55->119 2coiB PDBj 3e-05 9.4 %
:RPS:PDB   133->278 2a1aA PDBj 2e-17 14.1 %
:RPS:PDB   258->343 2cxcA PDBj 3e-25 27.9 %
:RPS:PDB   362->489 2bcrA PDBj 4e-14 11.2 %
:RPS:SCOP  1->119 1hh2P4  d.202.1.1 * 7e-31 45.7 %
:RPS:SCOP  136->202 1k0rA1  b.40.4.5 * 3e-17 37.3 %
:RPS:SCOP  205->279 1hh2P2  d.52.3.1 * 1e-18 48.0 %
:RPS:SCOP  281->343 1hh2P3  d.52.3.1 * 3e-09 44.4 %
:RPS:SCOP  361->426 1lb2B  a.60.3.1 * 2e-06 16.7 %
:RPS:SCOP  436->493 1lb2B  a.60.3.1 * 3e-06 13.8 %
:HMM:SCOP  1->129 1hh2P4 d.202.1.1 * 3.4e-37 48.4 %
:HMM:SCOP  134->202 1k0rA1 b.40.4.5 * 3.4e-19 46.4 %
:HMM:SCOP  203->280 1hh2P2 d.52.3.1 * 2.4e-30 60.3 %
:HMM:SCOP  282->347 1k0rA3 d.52.3.1 * 3.8e-18 39.4 %
:HMM:SCOP  355->422 1u9lA_ a.60.4.2 * 1.2e-14 36.8 %
:HMM:SCOP  426->495 1b22A_ a.60.4.1 * 6.7e-15 41.4 %
:RPS:PFM   4->119 PF08529 * NusA_N 2e-15 45.1 %
:HMM:PFM   4->127 PF08529 * NusA_N 8.2e-44 50.4 121/122  
:HMM:PFM   137->199 PF00575 * S1 3.3e-10 30.2 63/74  
:HMM:PFM   403->503 PF07418 * PCEMA1 0.00072 21.7 83/283  
:BLT:SWISS 1->496 NUSA_SHIFL e-144 53.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58581.1 GT:GENE ABA58581.1 GT:PRODUCT NusA antitermination factor GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2443399..2444919) GB:FROM 2443399 GB:TO 2444919 GB:DIRECTION - GB:PRODUCT NusA antitermination factor GB:PROTEIN_ID ABA58581.1 GB:DB_XREF GI:76883900 InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR010213 InterPro:IPR010214 LENGTH 506 SQ:AASEQ MNKEILMVVDAVSNEKGVNKEVIFQAIEAALAMATRKRYQEDIAVQVVIDRTTGDYQSFRSWEVIEDEAELDAPERQMHLSEACKRDPNAEVSGFVKEPMESIAFGRIAAQTAKQVIVQKVREAERAKVVAAYRGRIKEMVMGVVKRMDRGNIILDLGDNAEGIVPQEEMIPREAVRPGDRLRGYLKEVRAEGRGPQLVISRTAPELLIELFKLEVPEINENRIEVKGAARDPGLRAKIAVKTNETRIDPVGACVGMRGSRVQAVSNELAGERVDIVLWDEDPARFVINAMAPAEVASIVVDEERHSMDVAVAEGNLSQAIGRGGQNIRLASQLTGWELNVMTEQEAEEKGESEAKSLQQMFMEQLDVDEEVAAILVHEGFSSIEEMAYVPEQEILAIEEFDSQIVQELRNRARDVLLTRAIANEETIETVQLDQELLDMEEIDHGLASALASKGIVTKENLAEQAVDELMEIEGMNREKAARLIMAARESWFVSEKQDEETEERQ GT:EXON 1|1-506:0| BL:SWS:NREP 1 BL:SWS:REP 1->496|NUSA_SHIFL|e-144|53.3|493/495| SEG 120->132|kvreaerakvvaa| SEG 344->357|eqeaeekgeseaks| BL:PDB:NREP 3 BL:PDB:REP 1->341|1hh2P|1e-66|38.9|337/344| BL:PDB:REP 362->428|1wclA|8e-15|50.7|67/76| BL:PDB:REP 436->496|1wcnA|2e-12|52.5|61/70| RP:PDB:NREP 4 RP:PDB:REP 55->119|2coiB|3e-05|9.4|64/356| RP:PDB:REP 133->278|2a1aA|2e-17|14.1|142/161| RP:PDB:REP 258->343|2cxcA|3e-25|27.9|86/138| RP:PDB:REP 362->489|2bcrA|4e-14|11.2|125/325| RP:PFM:NREP 1 RP:PFM:REP 4->119|PF08529|2e-15|45.1|113/122|NusA_N| HM:PFM:NREP 3 HM:PFM:REP 4->127|PF08529|8.2e-44|50.4|121/122|NusA_N| HM:PFM:REP 137->199|PF00575|3.3e-10|30.2|63/74|S1| HM:PFM:REP 403->503|PF07418|0.00072|21.7|83/283|PCEMA1| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF08529|IPR013735| GO:PFM GO:0005515|"GO:protein binding"|PF08529|IPR013735| GO:PFM GO:0031554|"GO:regulation of transcription termination"|PF08529|IPR013735| RP:SCP:NREP 6 RP:SCP:REP 1->119|1hh2P4|7e-31|45.7|116/126|d.202.1.1| RP:SCP:REP 136->202|1k0rA1|3e-17|37.3|67/76|b.40.4.5| RP:SCP:REP 205->279|1hh2P2|1e-18|48.0|75/78|d.52.3.1| RP:SCP:REP 281->343|1hh2P3|3e-09|44.4|63/68|d.52.3.1| RP:SCP:REP 361->426|1lb2B|2e-06|16.7|66/72|a.60.3.1| RP:SCP:REP 436->493|1lb2B|3e-06|13.8|58/72|a.60.3.1| HM:SCP:REP 1->129|1hh2P4|3.4e-37|48.4|126/126|d.202.1.1|1/1|Transcription factor NusA, N-terminal domain| HM:SCP:REP 134->202|1k0rA1|3.4e-19|46.4|69/0|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 203->280|1hh2P2|2.4e-30|60.3|78/0|d.52.3.1|1/1|Prokaryotic type KH domain (KH-domain type II)| HM:SCP:REP 282->347|1k0rA3|3.8e-18|39.4|66/67|d.52.3.1|1/1|Prokaryotic type KH domain (KH-domain type II)| HM:SCP:REP 355->422|1u9lA_|1.2e-14|36.8|68/0|a.60.4.2|1/2|Rad51 N-terminal domain-like| HM:SCP:REP 426->495|1b22A_|6.7e-15|41.4|70/0|a.60.4.1|2/2|Rad51 N-terminal domain-like| OP:NHOMO 917 OP:NHOMOORG 916 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----1---1-111-----1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 504 STR:RPRED 99.6 SQ:SECSTR HHHHHHHHHHHHcccccGGGGGGcTTccHHHHHHHGGGEEcTTcccGGGGccccGGGHHHHHHHHHHHHTHTccHHHHTTcHHHHHHccGGGTccEEccTTcccTTEEEETTEEEEcccEEEEEccccEEEEccccTTcEEEEEEEEEcccEEEEEETTcEEETTTcEEEEEcccccTTcEEEEEEEEEETTTTEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccHHHHHHHTHHHHHHHHHHHHHHGGGHHHHHHHHHHccEEEEEEccccHHHHHHHHcTTccEEEEEEEEEEEEEEEEEcTTTHHHHHcGGGHHHHHHHHHHHHHHcEEEHHHHcccTTHHHHHHHHHHTTcTTccHHHHHHHHHHHHcccHHHHTccHHHHTTcTTccHHHHHHHHHHTTcHHTTcccGGGcccTTHHHHHHHHTcTTccHHHHHHHHHTTcccHHHHHHHccccHHHHHHHHTTHTTTGGGccEEHHHHHHHHHHHHHH## DISOP:02AL 347-357, 424-435, 495-506| PSIPRED ccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEEEEccccccccccccccHHHHHHHccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEccEEEEEEcccEEEEEEHHHcccccccccccEEEEEEEEEEEcccccEEEEEEccHHHHHHHHHHcccHHHccEEEEEEEEcccccccEEEEEEccccccEEEEEEccccHHHHHHHHHHccccEEEEEccccHHHHHHHHccccEEEEEEEcccccEEEEEEccccccEEEccccccHHHHHHHHccEEccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHcccEEHHHHHcccHHHHcccccccHHHHHHHHHHHHcccccccHHHccccccc //