[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58586.1
DDBJ      :             succinyldiaminopimelate desuccinylase
Swiss-Prot:DAPE_NITOC   RecName: Full=Succinyl-diaminopimelate desuccinylase;         Short=SDAP desuccinylase;         EC=3.5.1.18;AltName: Full=N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase;

Homologs  Archaea  45/68 : Bacteria  641/915 : Eukaryota  82/199 : Viruses  0/175   --->[See Alignment]
c.56.5d.58.19
:376 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   4->374 1vgyA PDBj e-115 56.8 %
:RPS:PDB   51->374 3d7gA PDBj 2e-48 8.5 %
:RPS:SCOP  2->201 1vgyA1  c.56.5.4 * 5e-57 53.1 %
:RPS:SCOP  179->291 1vgyA2  d.58.19.1 * 3e-23 59.3 %
:RPS:SCOP  291->374 1vgyA1  c.56.5.4 * 2e-26 51.2 %
:HMM:SCOP  1->374 1lfwA1 c.56.5.4 * 1.9e-61 35.9 %
:RPS:PFM   65->370 PF01546 * Peptidase_M20 5e-23 32.9 %
:HMM:PFM   62->371 PF01546 * Peptidase_M20 4.1e-39 38.3 167/171  
:BLT:SWISS 1->376 DAPE_NITOC 0.0 100.0 %
:PROS 97->135|PS00759|ARGE_DAPE_CPG2_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58586.1 GT:GENE ABA58586.1 GT:PRODUCT succinyldiaminopimelate desuccinylase GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 2449090..2450220 GB:FROM 2449090 GB:TO 2450220 GB:DIRECTION + GB:PRODUCT succinyldiaminopimelate desuccinylase GB:PROTEIN_ID ABA58586.1 GB:DB_XREF GI:76883905 InterPro:IPR002933 InterPro:IPR005941 InterPro:IPR011650 LENGTH 376 SQ:AASEQ MSATLELAKRLIACASITPRDAGCQGLLAQRLLALGFQGEQMNFGEVDNIWLRRGQKPPLFVFAGHTDVVPPGPPDKWLTDPFTPEVRNGLLYGRGAADMKGSLAAMVTACEHFINVHSDHAGSIAFLLTSDEEGPAINGTIKVVETLQARGEKIDYCLVGEPTSQKQVGDMIKNGRRGSLGGRLIVRGIQGHVAYPHLADNPIHSLAPALAVLCAQTWDQGNKDFPPTTFQISNIQGGTGATNVIPGEVEILFNFRYSTEVTHQQLQQQMEEILSQQRLNYELEWTLSGKPFLTAPGSLMTAVSQAVRGITGIDAEFSTTGGTSDGRFIAPTGAQVVELGPVNATIHKVNECVAVADLEILSRIYSRILEILLTE GT:EXON 1|1-376:0| SW:ID DAPE_NITOC SW:DE RecName: Full=Succinyl-diaminopimelate desuccinylase; Short=SDAP desuccinylase; EC=3.5.1.18;AltName: Full=N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; SW:GN Name=dapE; OrderedLocusNames=Noc_2126; SW:KW Amino-acid biosynthesis; Cobalt; Complete proteome;Diaminopimelate biosynthesis; Hydrolase; Lysine biosynthesis;Metal-binding; Zinc. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->376|DAPE_NITOC|0.0|100.0|376/376| GO:SWS:NREP 5 GO:SWS GO:0008652|"GO:cellular amino acid biosynthetic process"|Amino-acid biosynthesis| GO:SWS GO:0019877|"GO:diaminopimelate biosynthetic process"|Diaminopimelate biosynthesis| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0009085|"GO:lysine biosynthetic process"|Lysine biosynthesis| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| PROS 97->135|PS00759|ARGE_DAPE_CPG2_2|PDOC00613| SEG 22->39|agcqgllaqrllalgfqg| BL:PDB:NREP 1 BL:PDB:REP 4->374|1vgyA|e-115|56.8|366/370| RP:PDB:NREP 1 RP:PDB:REP 51->374|3d7gA|2e-48|8.5|317/691| RP:PFM:NREP 1 RP:PFM:REP 65->370|PF01546|5e-23|32.9|292/308|Peptidase_M20| HM:PFM:NREP 1 HM:PFM:REP 62->371|PF01546|4.1e-39|38.3|167/171|Peptidase_M20| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF01546|IPR002933| GO:PFM GO:0016787|"GO:hydrolase activity"|PF01546|IPR002933| RP:SCP:NREP 3 RP:SCP:REP 2->201|1vgyA1|5e-57|53.1|196/262|c.56.5.4| RP:SCP:REP 179->291|1vgyA2|3e-23|59.3|113/113|d.58.19.1| RP:SCP:REP 291->374|1vgyA1|2e-26|51.2|84/262|c.56.5.4| HM:SCP:REP 1->374|1lfwA1|1.9e-61|35.9|245/0|c.56.5.4|1/1|Zn-dependent exopeptidases| OP:NHOMO 1343 OP:NHOMOORG 768 OP:PATTERN 332321-222222124-21111122----11----11-1-111---111----11113312---2-11 222-2211------111----1--14-----1222214211---1-1-111-2-222---1---121-11211111111---4--21111-1---------1-111113---------------1-----------24455---12--------------------------------------1-22--1--2111111111121112421112111--2421-11111151-11111-11111111322241-5-33-2---112243121111--1----1111--11111111111-------------1--------1-2--------------3--1---1----1-------1---2-2----1--1-1222211111223431114324122222222223-222225252631544433333332322122343233433222222223331121111-11111--11111111111111111-122121134333333243222223333222222334322411443123223241331111111211111111111111-21-111311111---------1-11112121111111111111111111111111111312222322222111111211114112121-11233221111122323122222222222-2222222222222222223352221221111111111111111222222222122222222222211131111122222123322221221111111311111122222233333334133332344---------12221222223322211111111111111111---------------1-----------------------------11121222131 ----11--411--122-3-12211-13------111---1------221-2334--11----11---1---1-11-----1---------4------------------25121-2--1111113111-2G1-12---2-1--11121--2--3--123----1-------11-----1711------11----211-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 374 STR:RPRED 99.5 SQ:SECSTR GGccHHHHHHHHTccccTTcHHHHHHHHHHHHHHHHHTTcccccccGGGTEEEEcccEEEEEEEEEEEEEEcccGGTcEEEEEEEEEEEcccccccTTTTHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccGGGTcHHHHHHHHHTHHHHHHHEEEEEEcccccccccEcccEEEEEEcGGGHHHHHHHHHTcccccTTcTTccHHHHHHHHcccTTcccccccccccTHHHHHTTTccEEEEEEEEcccTTcccTTcTTccHHHHHHHTcTTcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHTTcHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHTTccTT## PSIPRED ccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccEEEEEEEccccEEEEEEcccccEEEEEccccccccccccccccccccEEEEccEEEEccccccHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccccHHHHHHHHHHccccccEEEEcccccccccccEEEEEccEEEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEccccccEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEEEccccccccccHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHccccEEEEEcccccccccccEEEHHHHHHHHHHHHHHHHHHHcc //