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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58599.1
DDBJ      :             Peptidase S1C, Do
Swiss-Prot:             

Homologs  Archaea  29/68 : Bacteria  867/915 : Eukaryota  88/199 : Viruses  0/175   --->[See Alignment]
b.36.1b.47.1
:479 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   99->370 2zleA PDBj 5e-58 45.7 %
:BLT:PDB   389->445 2zleA PDBj 2e-04 38.6 %
:RPS:PDB   112->260 3ee1A PDBj 9e-34 10.8 %
:RPS:PDB   253->366 2ehrA PDBj 7e-21 21.1 %
:RPS:PDB   376->467 3dj3A PDBj 5e-04 13.4 %
:RPS:SCOP  94->259 2bhgA1  b.47.1.4 * 5e-30 17.0 %
:RPS:SCOP  244->363 1nf3C  b.36.1.1 * 1e-23 14.2 %
:RPS:SCOP  422->478 2i4sA1  b.36.1.5 * 2e-05 15.8 %
:HMM:SCOP  1->289 1qtfA_ b.47.1.1 * 2.8e-69 50.9 %
:HMM:SCOP  237->363 1ry4A_ b.36.1.1 * 3.7e-26 39.4 %
:HMM:SCOP  387->476 1lcyA1 b.36.1.4 * 2.9e-18 35.2 %
:RPS:PFM   278->358 PF00595 * PDZ 6e-08 44.6 %
:HMM:PFM   109->261 PF00089 * Trypsin 1.1e-18 27.2 151/219  
:HMM:PFM   275->356 PF00595 * PDZ 2.1e-09 28.8 73/81  
:HMM:PFM   388->446 PF00595 * PDZ 6.3e-09 23.5 51/81  
:BLT:SWISS 30->478 DEGP_CHLMU 2e-83 39.3 %
:TM
:REPEAT 2|281->364|390->472
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58599.1 GT:GENE ABA58599.1 GT:PRODUCT Peptidase S1C, Do GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2466230..2467669) GB:FROM 2466230 GB:TO 2467669 GB:DIRECTION - GB:PRODUCT Peptidase S1C, Do GB:PROTEIN_ID ABA58599.1 GB:DB_XREF GI:76883918 InterPro:IPR001254 InterPro:IPR001478 InterPro:IPR001940 InterPro:IPR008256 InterPro:IPR011782 LENGTH 479 SQ:AASEQ MHRYRMILLLLAALFALPAQALEEGGVESLRQTGKAFAAVAREVSPSVVFIQVESIREERGSRAFPPPFGDEFFRRFFGEPFSPRGEAPKGQRRAIGQGSGFIFSSKKGLLSDKTYILTNSHVVEDADKIRVQFQDDREFEGEIVGTDPKSDIAVIEITVGGLPALEWGDSSKLQVGEWVIAMGNPFGLSHTLTVGVVSATGRTSLGISDYEDFIQTDAAINPGNSGGPLVNLNGEVVGVNTAIFSRSGGYMGIGFAIPSKLAKAIANQLIETGEVTRGYLGIVIQPLTAELAESFNMEQSQGILVAQVSEDSPAKKAGLKQGDVIVGYQDKPVKDIGGFRNRVALTAPGSRETLTIIRDGKRQKVKITIGELSQEQTLAEGPTQSAEELGLAVQTLTPELARQFDAKAGEGVVVTGVERGSIAAMAGIRVGNVILQINRKPIHSAKEFNRAMQESQDDKRALLLIRSGNMQHYVVLRW GT:EXON 1|1-479:0| BL:SWS:NREP 1 BL:SWS:REP 30->478|DEGP_CHLMU|2e-83|39.3|435/497| TM:NTM 1 TM:REGION 5->27| NREPEAT 1 REPEAT 2|281->364|390->472| SEG 8->22|llllaalfalpaqal| SEG 65->86|fpppfgdeffrrffgepfsprg| SEG 227->241|ggplvnlngevvgvn| SEG 410->421|gegvvvtgverg| BL:PDB:NREP 2 BL:PDB:REP 99->370|2zleA|5e-58|45.7|258/396| BL:PDB:REP 389->445|2zleA|2e-04|38.6|57/396| RP:PDB:NREP 3 RP:PDB:REP 112->260|3ee1A|9e-34|10.8|130/336| RP:PDB:REP 253->366|2ehrA|7e-21|21.1|114/117| RP:PDB:REP 376->467|3dj3A|5e-04|13.4|92/100| RP:PFM:NREP 1 RP:PFM:REP 278->358|PF00595|6e-08|44.6|74/82|PDZ| HM:PFM:NREP 3 HM:PFM:REP 109->261|PF00089|1.1e-18|27.2|151/219|Trypsin| HM:PFM:REP 275->356|PF00595|2.1e-09|28.8|73/81|PDZ| HM:PFM:REP 388->446|PF00595|6.3e-09|23.5|51/81|PDZ| GO:PFM:NREP 1 GO:PFM GO:0005515|"GO:protein binding"|PF00595|IPR001478| RP:SCP:NREP 3 RP:SCP:REP 94->259|2bhgA1|5e-30|17.0|153/194|b.47.1.4| RP:SCP:REP 244->363|1nf3C|1e-23|14.2|120/123|b.36.1.1| RP:SCP:REP 422->478|2i4sA1|2e-05|15.8|57/102|b.36.1.5| HM:SCP:REP 1->289|1qtfA_|2.8e-69|50.9|218/0|b.47.1.1|1/1|Trypsin-like serine proteases| HM:SCP:REP 237->363|1ry4A_|3.7e-26|39.4|127/128|b.36.1.1|1/2|PDZ domain-like| HM:SCP:REP 387->476|1lcyA1|2.9e-18|35.2|88/100|b.36.1.4|2/2|PDZ domain-like| OP:NHOMO 2415 OP:NHOMOORG 984 OP:PATTERN --1----1111111111111111-111112-1--1-----------1-----------------1-13 2482511111111133333-323333333333344422532444331121112231-1113421325344211111111111412222112111111--1111122212111111111111111121111111131333554444433473332222333433233554753322223322234411122-423222222222222222113333223122222211111125222222222222222222221111111111111111111122211111111111111111111111111111111111111111111111211311111111111413322223221132121222221212322221-2228333733333448687435445333333333333-6656665436315333665655343333331233332233333333323333533111111111111111111111111111111212212222244454433444554544444455444432243343342344342233242222111111122336322112123243222123234223265458634111111111111111111112112-332222233222222222222222222222221-1323411-11133332333333333333-3333333333333333333333332223333333333333333333332333133333333333311321111122224332222222222221222223222222223322222222222222222---------12222222222222222222222222222--412233331112122233--------------------------1111111111452 ----112-----111---------------------------------------------------------------------------------------------8-25544W243-3444752738G4-339132255433-422242264544311111--11121--114443j333648568-873421115 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 414 STR:RPRED 86.4 SQ:SECSTR ####################################HHHHHHcccccccccccccccccccc########################EEEcEEccETTccHHHHEETTTEEHHHHHHHHHHHHHHTTcHHHHHHHHHTTcTTTTcccHHHHHHHHHHHHHEEEEHHHHHHHccccccEEEEEEEEccccEcEEEEEEEccEEEccccTccEEEEEEEEEEEEcccccHHHHHHHHccHHHHHHHccccTGGGcEEEEEEEEEEccccTccEEEEcTTccEEEEccEHHHHHHHHHHHHTTcEEEEccccEcTTcHHHHHTccccEEEEEETTEEcccHHGHHHHHHTTcTTcEEEEEEEETTEEEEEEEEccccccccccccTTcHHHHHcccccccEccTHHTcccccTTccEEEcccccccTTGGGTccTTcEEccccccccccHHHHHHHHHTccccEccEEEEEETTEEEE##### DISOP:02AL 21-35, 58-67, 81-99| PSIPRED cHHHHHHHHHHHHHHHcccccccccccccHHHccccHHHHHHHHcccEEEEEEEEEEEccccccccccccccHHHHHcccccccccccccccEEEEEEEEEEEEEccccEEccccEEEEEEHEEccccEEEEEEccccEEEEEEEEEcccccEEEEEEccccccEEEEccccccccccEEEEEEEccccccEEEEEEEEEEccccccccccccEEEEEEEEccccccccEEEcccEEEEEEEEEEEEcccccEEEEEEcccHHHHHHHHHHHcccEEEEEEEEEEEEEcHHHHHHccccccccEEEEEEcccccHHHcccccccEEEEEccEEcccHHHHHHHHHHcccccEEEEEEEEccEEEEEEEEEEEccccccccccccccHHHccccccccccHHHHHHHcccccccEEEEcccccHHHHcccccccEEEEEccEEcccHHHHHHHHHHcccccEEEEEEEccccEEEEEEEc //