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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58617.1
DDBJ      :             GTP-binding signal recognition particle SRP54
Swiss-Prot:             

Homologs  Archaea  54/68 : Bacteria  685/915 : Eukaryota  97/199 : Viruses  0/175   --->[See Alignment]
b.65.1c.37.1
:393 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   153->199 1ii9B PDBj 5e-04 38.3 %
:BLT:PDB   207->364 2px0A PDBj 1e-21 29.7 %
:RPS:PDB   129->326 1augA PDBj 7e-19 11.4 %
:RPS:SCOP  128->213 1eg7A  c.37.1.10 * 5e-06 14.3 %
:RPS:SCOP  219->324 1f3uA  b.65.1.1 * 1e-17 12.3 %
:HMM:SCOP  108->195 1p9rA_ c.37.1.11 * 0.0003 27.3 %
:HMM:SCOP  166->368 1ls1A2 c.37.1.10 * 9.3e-35 35.0 %
:RPS:PFM   176->356 PF00448 * SRP54 6e-21 41.1 %
:HMM:PFM   176->364 PF00448 * SRP54 2.3e-42 35.7 185/196  
:BLT:SWISS 1->361 FLHF_PSEAE 5e-66 40.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58617.1 GT:GENE ABA58617.1 GT:PRODUCT GTP-binding signal recognition particle SRP54 GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2491438..2492619) GB:FROM 2491438 GB:TO 2492619 GB:DIRECTION - GB:PRODUCT GTP-binding signal recognition particle SRP54 GB:PROTEIN_ID ABA58617.1 GB:DB_XREF GI:76883936 InterPro:IPR000897 InterPro:IPR001687 InterPro:IPR003593 LENGTH 393 SQ:AASEQ MKIRRFTAPDVRQAIRQVREAMGADAVILSNRSVGEGVEIVAATDYEDTTPKQVLNSQRRDGAEPLPEKRTSFADQRGGSQEPILLEMHQEMKNLRNLVETQLSDLAWGEIGRRNPSKAQLLRRLMGLDLASDLCQQLAAQVNNEGAPHQIWQQALKGLTDLIPIANDDILSDGGIIALVGPTGVGKTTSVAKLAARFALCHGLHSVALVTTDCFRIGAQEQLHTYGRILGIPVKVARDQQTLQETLEYLADRRLVLIDTAGMSQRDMHLTEQFTMLAEGTLEIRNYLVLSAATQFSVLDEVVRKFNRIDLAGCILTKLDEAASLGGMVSAAIRHHLPLAYVCDGQRVPEDFSPARAQNIVHLLSEYAHEQEKGLTDEVLAQTFGRGGAYAHV GT:EXON 1|1-393:0| BL:SWS:NREP 1 BL:SWS:REP 1->361|FLHF_PSEAE|5e-66|40.7|361/429| BL:PDB:NREP 2 BL:PDB:REP 153->199|1ii9B|5e-04|38.3|47/550| BL:PDB:REP 207->364|2px0A|1e-21|29.7|158/258| RP:PDB:NREP 1 RP:PDB:REP 129->326|1augA|7e-19|11.4|184/210| RP:PFM:NREP 1 RP:PFM:REP 176->356|PF00448|6e-21|41.1|175/196|SRP54| HM:PFM:NREP 1 HM:PFM:REP 176->364|PF00448|2.3e-42|35.7|185/196|SRP54| GO:PFM:NREP 2 GO:PFM GO:0005525|"GO:GTP binding"|PF00448|IPR000897| GO:PFM GO:0006614|"GO:SRP-dependent cotranslational protein targeting to membrane"|PF00448|IPR000897| RP:SCP:NREP 2 RP:SCP:REP 128->213|1eg7A|5e-06|14.3|84/549|c.37.1.10| RP:SCP:REP 219->324|1f3uA|1e-17|12.3|106/118|b.65.1.1| HM:SCP:REP 108->195|1p9rA_|0.0003|27.3|88/401|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 166->368|1ls1A2|9.3e-35|35.0|200/0|c.37.1.10|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1210 OP:NHOMOORG 836 OP:PATTERN 11-121111112221-21--11-2---11-1111222-22222111-22-22112222221111--11 1-3----------------------------------------------111-----------1-------1111---222-111211--11----2---1-----1--1-------211----121-11121112-1122---11--1-111-1---1--1111-1---1-111---1111-112---1-1211-1-1-11211111123332211122122323333332222211111112221122222121222221112211221-12222-111111111221111111111111111111111111221112221122112222222121112221111311-12122112112221122312--2-1----121121122211121221------------112112121-111-----------112111111111111--------1---1222--1-----11--1211211111111-11--2221111--12222222222222222222222222222--222111111--11122232212211111112221221221132-211221213113332122-2--212222122222222222223222132112223122322122222222222222222221-22222--1---11111111111111111-11111111111111111111111111-1111111111111111111111-11-111111111111-11111-112222-1223111111121111111111111111-2111113222122222333---------2222222222222221111111112-----1221111112112112122-21121--1-111-1111-2-1-1112111212111-11 11121---311---1---------------------------------1111-111--------1111111-1-11----111111-1------------1--1--1--1--21112--11-1-22-1-131-1211---1--111---11--2-1111----11--1113-1-12112F211121362-212111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 346 STR:RPRED 88.0 SQ:SECSTR #######################################EEEEcccEEEEEETTTTEEEEEETTTccEEEcEEEcTTccEEEEEEEccccccEEEEEETTTccccEEEEGGGcccccHHcTccEEccHcccccHHHHHHHTTTTcETTEEEEEEEEcccTTHHHHHHHHHHHHHcEEEEEEEcTTccccEEccEEEccHTTTccccEEEEcccccccccTTccccccccccTTcccEEEccccHHHHHHHHHHTccccccccccHHHHHHHHHHHHHHHHcTTcEEEEEEEccccccccccHHHHHHHHHHHHHHHHHccccccccTHHHHHHHHHHHHEEEEccccTETcEEEccHHHHHHHHHHHTcHHHHHHHHHHHHHHHc######## DISOP:02AL 29-107, 373-386, 388-390, 392-393| PSIPRED ccEEEEccccHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHcccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc //