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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58625.1
DDBJ      :             Flagellar motor switch protein FliM
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  430/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.139.1d.252.1
:336 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   47->230 2hp7A PDBj 6e-11 25.1 %
:RPS:PDB   3->108 3ck8A PDBj 2e-14 15.5 %
:RPS:SCOP  56->232 1xkrA  d.252.1.1 * 1e-22 11.0 %
:RPS:SCOP  251->326 1o6aA  b.139.1.1 * 6e-11 15.8 %
:HMM:SCOP  4->232 1xkrA_ d.252.1.1 * 1.5e-16 25.1 %
:HMM:SCOP  249->333 1o6aA_ b.139.1.1 * 5.2e-12 32.9 %
:RPS:PFM   40->232 PF02154 * FliM 2e-51 51.0 %
:RPS:PFM   257->320 PF01052 * SpoA 6e-07 37.5 %
:HMM:PFM   40->232 PF02154 * FliM 7.8e-68 42.2 192/192  
:HMM:PFM   251->324 PF01052 * SpoA 3.2e-21 36.5 74/77  
:BLT:SWISS 1->320 FLIM_PSEAE 4e-93 50.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58625.1 GT:GENE ABA58625.1 GT:PRODUCT Flagellar motor switch protein FliM GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2498598..2499608) GB:FROM 2498598 GB:TO 2499608 GB:DIRECTION - GB:PRODUCT Flagellar motor switch protein FliM GB:PROTEIN_ID ABA58625.1 GB:DB_XREF GI:76883944 InterPro:IPR001543 InterPro:IPR001689 LENGTH 336 SQ:AASEQ MAATDILSQDEVDALLSGIAGSRSEADPRVLGDEKTIRPYDFSSEDRIARAYVPLLEMINERFARQFRLSLFNLLRRATEVTVGGVQVLKFSEYLHTLFMPTSLNLVQIDPLRGTGLFVFDPKLVFMLVEQYFGGSGQFYNRLENREFTPTEVHIIQLVLERTFADLKQAWEPVLAVNFEYLQTELNPRLATIASSSEMVVVSTFHVEFEGGGGEFHIALPYTLLEPVRELLATGKKDDFAQADGGWNQALRKNVSDAEVELSCTLTEIQLSLGEILALKSGDILPIELPSTVTALADGIPVFRVRYGIHHGSRALKVVERLLSPESFTEKSSAEL GT:EXON 1|1-336:0| BL:SWS:NREP 1 BL:SWS:REP 1->320|FLIM_PSEAE|4e-93|50.2|317/323| SEG 208->216|efeggggef| BL:PDB:NREP 1 BL:PDB:REP 47->230|2hp7A|6e-11|25.1|171/179| RP:PDB:NREP 1 RP:PDB:REP 3->108|3ck8A|2e-14|15.5|103/501| RP:PFM:NREP 2 RP:PFM:REP 40->232|PF02154|2e-51|51.0|192/192|FliM| RP:PFM:REP 257->320|PF01052|6e-07|37.5|64/77|SpoA| HM:PFM:NREP 2 HM:PFM:REP 40->232|PF02154|7.8e-68|42.2|192/192|FliM| HM:PFM:REP 251->324|PF01052|3.2e-21|36.5|74/77|SpoA| GO:PFM:NREP 4 GO:PFM GO:0001539|"GO:ciliary or flagellar motility"|PF02154|IPR001689| GO:PFM GO:0003774|"GO:motor activity"|PF02154|IPR001689| GO:PFM GO:0006935|"GO:chemotaxis"|PF02154|IPR001689| GO:PFM GO:0009425|"GO:bacterial-type flagellum basal body"|PF02154|IPR001689| RP:SCP:NREP 2 RP:SCP:REP 56->232|1xkrA|1e-22|11.0|172/205|d.252.1.1| RP:SCP:REP 251->326|1o6aA|6e-11|15.8|76/87|b.139.1.1| HM:SCP:REP 4->232|1xkrA_|1.5e-16|25.1|183/0|d.252.1.1|1/1|CheC-like| HM:SCP:REP 249->333|1o6aA_|5.2e-12|32.9|85/87|b.139.1.1|1/1|Surface presentation of antigens (SPOA)| OP:NHOMO 446 OP:NHOMOORG 430 OP:PATTERN -------------------------------------------------------------------- 111-------------------------------------1---1---1----1--------1-1-------------------1111--------------------1------------------------------------1---------------------------------------------111-----1111111111111111111111111111111111------------------------------------------------------------------------------------------12-1111111111111-111---111--11111111111111111111--1111-111----1121111112112------------22222122--1-------------1-1-1---1111-----------1111-121--------------------------------1-1111111111111111111111111111111111--111111111--111111111111-------111-11111-11111111111111111111------1-1111-1111111111111111111---11-1111111-1111121111111111111---1111---1--11111111111111111-1111111111111-11--1---111111111111111111111111-1111211111111-1111---------1111--111-------------------------1111111111111111111---------1111211111111111111111112------111111111111111111--------------------------1-11111111-1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 216 STR:RPRED 64.3 SQ:SECSTR ##HHHHHHHHHHHHHTTcccHHHHHHHHHHHHHTTcccccccccHHHHHHHHHHHHTTcccHHHHHHHTTccccTTcccTTGGGcTTcccccGGGGcccccHHTTcccETTccccEEEEEcHHHHHHHHHHHHTcc#######ccccccHHHHHHHHHHHHHHHHHHHHHTH#####HHHccEEEccGGGcccccTTcEEEEEEEEEEETTEEEEEEEEEEHHHHHHHHH########################################################################################################## DISOP:02AL 20-39, 231-251, 324-336| PSIPRED ccccccccHHHHHHHHcccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEEHHHHHHHccccEEEEEEEEcccccEEEEEEcHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccEEEccccccEEEEEEEEEEEcccEEEEEEEHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccEEEEEEEEEEEEcHHHHHccccccEEEEcccccEEEEEccEEEEEEEEEEEccEEEEEEEEEEcccccccccccccc //