[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58666.1
DDBJ      :             transcriptional regulator, AbrB family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.129.1
:80 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   1->45 1ektA PDBj 5e-08 17.8 %
:RPS:PDB   17->61 1bn6A PDBj 1e-04 13.3 %
:RPS:SCOP  4->45 1mvfD  b.129.1.1 * 2e-07 19.0 %
:HMM:SCOP  1->80 1ub4C_ b.129.1.1 * 1.2e-10 26.7 %
:HMM:PFM   6->47 PF04014 * SpoVT_AbrB 5.3e-09 21.4 42/47  
:HMM:PFM   54->77 PF04267 * SoxD 0.00085 41.7 24/84  
:BLT:SWISS 5->56 ABHDB_HUMAN 2e-04 32.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58666.1 GT:GENE ABA58666.1 GT:PRODUCT transcriptional regulator, AbrB family GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2549811..2550053) GB:FROM 2549811 GB:TO 2550053 GB:DIRECTION - GB:PRODUCT transcriptional regulator, AbrB family GB:PROTEIN_ID ABA58666.1 GB:DB_XREF GI:76883985 InterPro:IPR006339 LENGTH 80 SQ:AASEQ MTNNLVTLSSKNQVVIPRAAREALKLKPGQQLLVLARGDHLVMVPRPEDFVAKLRGLHREVWPQENGKNYLEKERDAWDD GT:EXON 1|1-80:0| BL:SWS:NREP 1 BL:SWS:REP 5->56|ABHDB_HUMAN|2e-04|32.7|52/100| RP:PDB:NREP 2 RP:PDB:REP 1->45|1ektA|5e-08|17.8|45/53| RP:PDB:REP 17->61|1bn6A|1e-04|13.3|45/291| HM:PFM:NREP 2 HM:PFM:REP 6->47|PF04014|5.3e-09|21.4|42/47|SpoVT_AbrB| HM:PFM:REP 54->77|PF04267|0.00085|41.7|24/84|SoxD| RP:SCP:NREP 1 RP:SCP:REP 4->45|1mvfD|2e-07|19.0|42/44|b.129.1.1| HM:SCP:REP 1->80|1ub4C_|1.2e-10|26.7|75/0|b.129.1.1|1/1|AbrB/MazE/MraZ-like| OP:NHOMO 1 OP:NHOMOORG 1 OP:PATTERN -------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 67 STR:RPRED 83.8 SQ:SECSTR cccEEEcccTTccccccHHHHHHHcccccccEEEEEETTEEEEEEHHHHHHHHHHHHcGGGccEccc############# DISOP:02AL 1-3, 63-69, 75-80| PSIPRED ccccEEEEcccccEEEcHHHHHHHccccccEEEEEEcccEEEEEcccHHHHHHHHcccccccccccHHHHHHHHHHHHcc //