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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58707.1
DDBJ      :             cysteinyl-tRNA synthetase
Swiss-Prot:SYC_NITOC    RecName: Full=Cysteinyl-tRNA synthetase;         EC=6.1.1.16;AltName: Full=Cysteine--tRNA ligase;         Short=CysRS;

Homologs  Archaea  61/68 : Bacteria  906/915 : Eukaryota  190/199 : Viruses  1/175   --->[See Alignment]
a.27.1c.26.1
:485 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->484 1u0bB PDBj e-134 52.6 %
:RPS:PDB   2->258 3e4cB PDBj 3e-58 11.3 %
:RPS:PDB   250->300 2ab5B PDBj 4e-09 8.0 %
:RPS:PDB   294->476 3e98A PDBj 2e-25 15.8 %
:RPS:SCOP  1->315 1li5A2  c.26.1.1 * 1e-52 60.5 %
:RPS:SCOP  318->484 1u0bB1  a.27.1.1 * 4e-24 42.7 %
:HMM:SCOP  1->315 1li5A2 c.26.1.1 * 1e-100 37.9 %
:HMM:SCOP  316->485 1u0bB1 a.27.1.1 * 1.9e-35 42.5 %
:RPS:PFM   15->314 PF01406 * tRNA-synt_1e e-123 65.2 %
:RPS:PFM   352->393 PF09190 * DALR_2 1e-06 54.8 %
:HMM:PFM   17->313 PF01406 * tRNA-synt_1e 2.5e-133 51.9 297/301  
:HMM:PFM   352->414 PF09190 * DALR_2 1.5e-22 57.1 63/63  
:BLT:SWISS 1->485 SYC_NITOC 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58707.1 GT:GENE ABA58707.1 GT:PRODUCT cysteinyl-tRNA synthetase GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2597100..2598557) GB:FROM 2597100 GB:TO 2598557 GB:DIRECTION - GB:PRODUCT cysteinyl-tRNA synthetase GB:PROTEIN_ID ABA58707.1 GB:DB_XREF GI:76884026 InterPro:IPR002308 LENGTH 485 SQ:AASEQ MLRIYNSLTRRKEEFIPIESGKVRMYVCGMTVYDLCHVGHARVMVVFDMVVRYLRASGFEVIYVRNITDIDDKIIHRANERGESIHTLTARYIQALHEDEASLQILPPDREPRATESMEAILAMVRQLLDQGYAYQGENGDIYYDVSHFEGYGALSGRHLEDLRAGERVQVNEAKTDPLDFVLWKAAKSGEPAWESPWGPGRPGWHIECSAMSIQELGTHFDIHGGGQDLQFPHHENEIAQSEAATGGKFVNYWMHNGFVRLNDEKMSKSLGNFFTVREVLEHYHPEVLRYFILSSHYRSPLNYTKQQLDTAKAAMTRLYTALRGIPRGEDRASAQGLSWEFTDGGDPFVLRFREAMDDDFNTPEALALLNEVRHALNRAREAGDTEKGQSLAVLLRSLGGILGLLAHEPEQFLRDSRQVAAIPDTAAAGEEAVLSHDGIEQLVAQRTVARKNKDWAEADRIRGILKDQGITLEDTAAGTLWRRG GT:EXON 1|1-485:0| SW:ID SYC_NITOC SW:DE RecName: Full=Cysteinyl-tRNA synthetase; EC=6.1.1.16;AltName: Full=Cysteine--tRNA ligase; Short=CysRS; SW:GN Name=cysS; OrderedLocusNames=Noc_2249; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Metal-binding; Nucleotide-binding; Protein biosynthesis; Zinc. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->485|SYC_NITOC|0.0|100.0|485/485| GO:SWS:NREP 7 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| SEG 395->406|llrslggilgll| BL:PDB:NREP 1 BL:PDB:REP 1->484|1u0bB|e-134|52.6|460/461| RP:PDB:NREP 3 RP:PDB:REP 2->258|3e4cB|3e-58|11.3|247/269| RP:PDB:REP 250->300|2ab5B|4e-09|8.0|50/246| RP:PDB:REP 294->476|3e98A|2e-25|15.8|152/176| RP:PFM:NREP 2 RP:PFM:REP 15->314|PF01406|e-123|65.2|299/300|tRNA-synt_1e| RP:PFM:REP 352->393|PF09190|1e-06|54.8|42/65|DALR_2| HM:PFM:NREP 2 HM:PFM:REP 17->313|PF01406|2.5e-133|51.9|297/301|tRNA-synt_1e| HM:PFM:REP 352->414|PF09190|1.5e-22|57.1|63/63|DALR_2| GO:PFM:NREP 12 GO:PFM GO:0000166|"GO:nucleotide binding"|PF01406|IPR015803| GO:PFM GO:0004817|"GO:cysteine-tRNA ligase activity"|PF01406|IPR015803| GO:PFM GO:0005524|"GO:ATP binding"|PF01406|IPR015803| GO:PFM GO:0005737|"GO:cytoplasm"|PF01406|IPR015803| GO:PFM GO:0006412|"GO:translation"|PF01406|IPR015803| GO:PFM GO:0006423|"GO:cysteinyl-tRNA aminoacylation"|PF01406|IPR015803| GO:PFM GO:0000166|"GO:nucleotide binding"|PF09190|IPR015273| GO:PFM GO:0004817|"GO:cysteine-tRNA ligase activity"|PF09190|IPR015273| GO:PFM GO:0005524|"GO:ATP binding"|PF09190|IPR015273| GO:PFM GO:0005737|"GO:cytoplasm"|PF09190|IPR015273| GO:PFM GO:0006412|"GO:translation"|PF09190|IPR015273| GO:PFM GO:0006423|"GO:cysteinyl-tRNA aminoacylation"|PF09190|IPR015273| RP:SCP:NREP 2 RP:SCP:REP 1->315|1li5A2|1e-52|60.5|299/299|c.26.1.1| RP:SCP:REP 318->484|1u0bB1|4e-24|42.7|143/146|a.27.1.1| HM:SCP:REP 1->315|1li5A2|1e-100|37.9|314/315|c.26.1.1|1/1|Nucleotidylyl transferase| HM:SCP:REP 316->485|1u0bB1|1.9e-35|42.5|146/0|a.27.1.1|1/1|Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases| OP:NHOMO 1444 OP:NHOMOORG 1158 OP:PATTERN 1111111111111111111111111111111111---11111211-11--111-11111111111111 1112222222232322222-22222222222222222222322322222221222222222231233222211111111111111111111111111--1111111111111111111111111111111111111222221112222111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111122111111211111211111111111111111121111111111111111111123212211221111111111111111112231111111111111111111111111111111111111111111111111111111111-1111111111121111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111211111211111111111111111111111111111111111111111111-11111111111111111111111111111111 1111223-311111111111111111211111122111211111111111111111111111111111-21111121-1111111111-12112111111111111123242424222221222662427K5-323-22232232-21--41142322224513232222212333222K2321243241322322222 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- STR:NPRED 485 STR:RPRED 100.0 SQ:SECSTR cHHHHHHHGGGccccccTTTccEEEEEEEccccccccccccTTHHHHHHHHHHHHHTTEEEEEEEcccHHHHHHHHHHHcGGGGGcccEEEEEEEEEETTEEEcTTccTTcccEEccHHHHHHHHHHHcTTTcGGGTTEccEEEEEEEEcTccTTTTTTTcccccccccccHHHccccccEEEEEEcccccccccccTccccccHHHHHHHHHHHTTTccHHHHHHHHHHHTccccccccccEEEcccccccccccTTcccccHHHHHHGGTccccHHHHHTTccHHHHHHHHHTccTTccccccHHHHHHHHHHHHHHHHHHTHHcTTccccccccEccccccccHHHHHHHHHHHHcTccHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHTTTcHHHHHHHHHHTTTcHHHHHHHHTTcccccccGGGGGcccccccccccccccccccHHHHHHHHH DISOP:02AL 166-172, 479-481, 484-485| PSIPRED cEEEEEcccccccEEEcccccccEEEEEccEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccEEEEccccEEEEccccccccHHHcccHHHHHccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHccccccEEEEEHHHHccHHHHHHHHHHHcccccccEEEEEEcEEcccccHHHHHcccEEcHHHHHHHccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEEcc //