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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58759.1
DDBJ      :             SSU ribosomal protein S4P
Swiss-Prot:RS4_NITOC    RecName: Full=30S ribosomal protein S4;

Homologs  Archaea  0/68 : Bacteria  911/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
d.66.1
:208 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->208 1vs5D PDBj 9e-82 69.8 %
:RPS:PDB   1->208 3bbnD PDBj 8e-38 35.2 %
:RPS:SCOP  2->208 1fjgD  d.66.1.2 * 4e-41 47.8 %
:HMM:SCOP  2->208 1fjgD_ d.66.1.2 * 3.2e-68 49.5 %
:RPS:PFM   3->97 PF00163 * Ribosomal_S4 1e-11 48.4 %
:RPS:PFM   99->144 PF01479 * S4 6e-09 54.3 %
:HMM:PFM   2->97 PF00163 * Ribosomal_S4 3.5e-29 43.0 93/94  
:HMM:PFM   99->145 PF01479 * S4 6.4e-23 53.2 47/48  
:BLT:SWISS 1->208 RS4_NITOC e-108 100.0 %
:PROS 96->120|PS00632|RIBOSOMAL_S4
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58759.1 GT:GENE ABA58759.1 GT:PRODUCT SSU ribosomal protein S4P GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2652965..2653591) GB:FROM 2652965 GB:TO 2653591 GB:DIRECTION - GB:PRODUCT SSU ribosomal protein S4P GB:PROTEIN_ID ABA58759.1 GB:DB_XREF GI:76884078 InterPro:IPR001912 InterPro:IPR002942 InterPro:IPR005709 LENGTH 208 SQ:AASEQ MAKYTGPKLKQARREGTDLFLKSGVRPIDSKCKIEQVPGQHGAGARRARMSDYALQLREKQKLRRMYGVLERQFRRYYKEAARRKGSTGENLLKLLESRLDNVVYRMGFGSTRAEARQLINHKGVLVNGQGINIPSYQVRAEDVVAVREKAKRQDRIKFALELAQARAEAEWIEINAGKLEGVFKRVPERSELAPDIQENLVVELYSK GT:EXON 1|1-208:0| SW:ID RS4_NITOC SW:DE RecName: Full=30S ribosomal protein S4; SW:GN Name=rpsD; OrderedLocusNames=Noc_2301; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->208|RS4_NITOC|e-108|100.0|208/208| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 96->120|PS00632|RIBOSOMAL_S4|PDOC00549| SEG 160->171|alelaqaraeae| BL:PDB:NREP 1 BL:PDB:REP 2->208|1vs5D|9e-82|69.8|205/205| RP:PDB:NREP 1 RP:PDB:REP 1->208|3bbnD|8e-38|35.2|199/199| RP:PFM:NREP 2 RP:PFM:REP 3->97|PF00163|1e-11|48.4|91/93|Ribosomal_S4| RP:PFM:REP 99->144|PF01479|6e-09|54.3|46/46|S4| HM:PFM:NREP 2 HM:PFM:REP 2->97|PF00163|3.5e-29|43.0|93/94|Ribosomal_S4| HM:PFM:REP 99->145|PF01479|6.4e-23|53.2|47/48|S4| GO:PFM:NREP 3 GO:PFM GO:0005622|"GO:intracellular"|PF00163|IPR001912| GO:PFM GO:0019843|"GO:rRNA binding"|PF00163|IPR001912| GO:PFM GO:0003723|"GO:RNA binding"|PF01479|IPR002942| RP:SCP:NREP 1 RP:SCP:REP 2->208|1fjgD|4e-41|47.8|205/208|d.66.1.2| HM:SCP:REP 2->208|1fjgD_|3.2e-68|49.5|206/208|d.66.1.2|1/1|Alpha-L RNA-binding motif| OP:NHOMO 954 OP:NHOMOORG 917 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111211111111111111112211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111113231222222212111222222111112111111111111111111111211111111111111111111111111111111111-1111111111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111122211111111121112121111111111111111111111111112211111111111111111111111111111111111111121111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------1-1----------1-1--2------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 208 STR:RPRED 100.0 SQ:SECSTR ccccccccTTcccccccccccccccccccccccccccccccccccccccccTTHHHHTTHHHHHHHHTccHHHHHHHHHHHHHccccTTTTTTHHHHccTTTTTTTTTcccccHHHHHHHHTTcEEETTEEcccTTccccTTEEEEEcccTTccHHHHHHcccTTTccccTTEEEETTTTEEEEcccccGGGccccccHHHHTTTccc DISOP:02AL 27-53| PSIPRED ccccccccEEEHEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccEEEccEEEccccEEEccccEEEEccccccHHHHHHHHHHccccccccEEEEEHHHcEEEEEEcccccccccccccEEEEEEEcc //