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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58879.1
DDBJ      :             Periplasmic solute binding protein
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  540/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.92.2
:296 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   31->292 1pq4B PDBj 2e-49 39.2 %
:RPS:PDB   33->293 3cx3B PDBj 5e-47 22.0 %
:RPS:SCOP  27->295 1xvlA1  c.92.2.2 * 2e-61 24.5 %
:HMM:SCOP  31->296 1pq4A_ c.92.2.2 * 3.6e-78 36.1 %
:RPS:PFM   12->295 PF01297 * SBP_bac_9 5e-35 37.1 %
:HMM:PFM   13->295 PF01297 * SBP_bac_9 3.5e-74 33.3 282/303  
:BLT:SWISS 35->294 Y541_CHLPN 2e-26 30.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58879.1 GT:GENE ABA58879.1 GT:PRODUCT Periplasmic solute binding protein GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2770253..2771143) GB:FROM 2770253 GB:TO 2771143 GB:DIRECTION - GB:PRODUCT Periplasmic solute binding protein GB:PROTEIN_ID ABA58879.1 GB:DB_XREF GI:76884198 InterPro:IPR006127 InterPro:IPR006128 LENGTH 296 SQ:AASEQ MKFGNGSPRSYLASLLAAWIGCWSPCAYTADPLPVFVSILPQKYFVERIGGRQVQVSVMVRQGQSPETYEPTPRQMAKLAQAKLYFRIGIPFENIWLERIIAANPRMEVVDCRRGISLLPVRKGHPALEAGDQHGMADPHIWTSPPLVKIMAAHIRNALIAAHPVSSSQFEKNYQAFIQDLNQLDQYIRQTLAGITHRRFMVFHPAWRYFARTYGLEEIPIERAGKEPGAKSLAALIEQGRQEEFRAIFVQKQSSRSNAELIARAIGAEVIVLDPLAEDYGRNLRHVATVLAKVLR GT:EXON 1|1-296:0| BL:SWS:NREP 1 BL:SWS:REP 35->294|Y541_CHLPN|2e-26|30.5|249/278| BL:PDB:NREP 1 BL:PDB:REP 31->292|1pq4B|2e-49|39.2|260/264| RP:PDB:NREP 1 RP:PDB:REP 33->293|3cx3B|5e-47|22.0|245/255| RP:PFM:NREP 1 RP:PFM:REP 12->295|PF01297|5e-35|37.1|275/291|SBP_bac_9| HM:PFM:NREP 1 HM:PFM:REP 13->295|PF01297|3.5e-74|33.3|282/303|SBP_bac_9| GO:PFM:NREP 2 GO:PFM GO:0030001|"GO:metal ion transport"|PF01297|IPR006127| GO:PFM GO:0046872|"GO:metal ion binding"|PF01297|IPR006127| RP:SCP:NREP 1 RP:SCP:REP 27->295|1xvlA1|2e-61|24.5|261/279|c.92.2.2| HM:SCP:REP 31->296|1pq4A_|3.6e-78|36.1|266/289|c.92.2.2|1/1|"Helical backbone" metal receptor| OP:NHOMO 854 OP:NHOMOORG 549 OP:PATTERN ----------------------------------1-----------1111111--------------3 --1-1-2----111-------1----------1---1-21-1-1-1--1---1111--11221---11112-------21--12--111111-1111-------------122222222222221111111111-1211221113123132222222111212122232121111--12111121-1111--11222221222212121232222131211212133333323----------------112-3----------------1-----212444333332222222322222333233333333342211122231-11211111111111-111111-11132--1133211111111111-12-11----222221111111111-2211111111112-111112--211132221213222112---11211-1111------------1112--1------------------------1-------1--11---------------------------------1-----1-111--1----111111111--112-11211111-11111-21211-1111--11-1111111111111-1-------21122--111-----------------------------21121------51231331112123311-1111312121132111111333332222222222222222222322222222-322222212222--2------------1111-1121222221222------------11111233-11121222---------231131111111111----------------1111------------22--------------------------111--1---11-1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 266 STR:RPRED 89.9 SQ:SECSTR ##############################cccEEEEccHHHHHHHHHHHGGGcEEEEEccccccTTTccccHHHHHHHHHccEEEEccTTTcGGGGGTcccTTTTccccEEEccTTcccccccccccccccccccccccGGGcHHHHHHHHHHHHHHTTTccTTcTTEEHHHHHHHHHHHHHHHHHHHHHTTTccccEEEEcccccHHHHHHTTcEEEEcccTTccccHHHHHHHHHHHHHHcccEEEEccccccccTTTHHHHcccEEEEcccccccHHHHHHHHHHHHTcHHc DISOP:02AL 1-4, 26-29, 223-231| PSIPRED cccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEHHHHHHHHHHcccEEEEEEEEccccccccccccHHHHHHHHHccEEEEEcccccHHHHHHHHHcccccEEEEEcccccccccccccccccccccccccccEEEEcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccEEEEEcccHHHHHHHHHHHHHHHHHHcc //