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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58991.1
DDBJ      :             transcriptional regulator, AbrB family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  12/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.129.1
:89 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   3->45 1ektA PDBj 2e-07 21.4 %
:RPS:SCOP  3->43 1mvfD  b.129.1.1 * 2e-07 22.5 %
:HMM:SCOP  1->47 1yfbA1 b.129.1.3 * 3.4e-07 30.4 %
:HMM:PFM   4->46 PF04014 * SpoVT_AbrB 4e-11 37.2 43/47  

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58991.1 GT:GENE ABA58991.1 GT:PRODUCT transcriptional regulator, AbrB family GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 2889675..2889944 GB:FROM 2889675 GB:TO 2889944 GB:DIRECTION + GB:PRODUCT transcriptional regulator, AbrB family GB:PROTEIN_ID ABA58991.1 GB:DB_XREF GI:76884310 InterPro:IPR006339 InterPro:IPR007159 LENGTH 89 SQ:AASEQ MATTLTSKGQVTVPKKIRDYLGLRPGSAVDFSLGPHGEVILRPAEDTPPERRKDRFGKLRGTLDTGRTTDEWMHLLRGYDADASDPGLK GT:EXON 1|1-89:0| RP:PDB:NREP 1 RP:PDB:REP 3->45|1ektA|2e-07|21.4|42/53| HM:PFM:NREP 1 HM:PFM:REP 4->46|PF04014|4e-11|37.2|43/47|SpoVT_AbrB| RP:SCP:NREP 1 RP:SCP:REP 3->43|1mvfD|2e-07|22.5|40/44|b.129.1.1| HM:SCP:REP 1->47|1yfbA1|3.4e-07|30.4|46/0|b.129.1.3|1/1|AbrB/MazE/MraZ-like| OP:NHOMO 13 OP:NHOMOORG 12 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------11--11-2-111--1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 42 STR:RPRED 47.2 SQ:SECSTR ##EcccTTccccccHHHHHHHcccccccEEEEEE#TTEEEEEEcc############################################ DISOP:02AL 88-89| PSIPRED cccEEcccccEEccHHHHHHcccccccEEEEEEccccEEEEEcccccHHHHHHHHHHcccccccccccHHHHHHHHccccccccccccc //