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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA58998.1
DDBJ      :             transcriptional regulator, AbrB family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  13/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.129.1
:89 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   2->48 1ektA PDBj 3e-08 19.1 %
:RPS:SCOP  3->54 1ub4C  b.129.1.1 * 2e-07 26.9 %
:HMM:SCOP  1->73 1ub4C_ b.129.1.1 * 3.3e-10 24.7 %
:HMM:PFM   5->48 PF04014 * SpoVT_AbrB 9.8e-11 34.1 44/47  

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA58998.1 GT:GENE ABA58998.1 GT:PRODUCT transcriptional regulator, AbrB family GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2894285..2894554) GB:FROM 2894285 GB:TO 2894554 GB:DIRECTION - GB:PRODUCT transcriptional regulator, AbrB family GB:PROTEIN_ID ABA58998.1 GB:DB_XREF GI:76884317 InterPro:IPR006339 InterPro:IPR007159 LENGTH 89 SQ:AASEQ MEITRLSSKGQIIIPKTIRAAHHWDAGMEFIVEERDGNLILRPLKPFPVTRLEKGLGCTGYQGSPKSLEEMDKGIAESLRQCWSKNKKR GT:EXON 1|1-89:0| RP:PDB:NREP 1 RP:PDB:REP 2->48|1ektA|3e-08|19.1|47/53| HM:PFM:NREP 1 HM:PFM:REP 5->48|PF04014|9.8e-11|34.1|44/47|SpoVT_AbrB| RP:SCP:NREP 1 RP:SCP:REP 3->54|1ub4C|2e-07|26.9|52/75|b.129.1.1| HM:SCP:REP 1->73|1ub4C_|3.3e-10|24.7|73/0|b.129.1.1|1/1|AbrB/MazE/MraZ-like| OP:NHOMO 13 OP:NHOMOORG 13 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------11--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---1-----1---------------------1--1------1------------------------------------------------------------------------------------------------------------------------------------------------------------1--11-1----------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 47 STR:RPRED 52.8 SQ:SECSTR #EEEcccTTccccccHHHHHHHcccccccEEEEEETTEEEEEEccccc######################################### DISOP:02AL 85-89| PSIPRED cEEEEEccccEEEEcHHHHHHHccccccEEEEEEcccEEEEccccccccccHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccc //