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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59045.1
DDBJ      :             transcription termination factor Rho
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  780/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.140.3b.40.4c.37.1
:418 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->417 1pvoA PDBj e-178 75.5 %
:RPS:PDB   1->130 1a63A PDBj 3e-34 73.8 %
:RPS:PDB   138->418 2dpyA PDBj 2e-46 21.4 %
:RPS:SCOP  2->47 1a62A1  a.140.3.1 * 3e-16 56.5 %
:RPS:SCOP  48->125 1a62A2  b.40.4.5 * 4e-22 83.3 %
:RPS:SCOP  129->417 1pv4A3  c.37.1.11 * 2e-43 75.2 %
:HMM:SCOP  1->47 1a62A1 a.140.3.1 * 1.1e-12 57.4 %
:HMM:SCOP  48->125 1a62A2 b.40.4.5 * 1.6e-35 75.6 %
:HMM:SCOP  89->372 1e79A3 c.37.1.11 * 3.4e-75 37.7 %
:RPS:PFM   6->46 PF07498 * Rho_N 2e-08 58.5 %
:RPS:PFM   51->126 PF07497 * Rho_RNA_bind 7e-31 75.7 %
:RPS:PFM   160->359 PF00006 * ATP-synt_ab 1e-11 29.2 %
:HMM:PFM   160->364 PF00006 * ATP-synt_ab 2.8e-46 28.0 200/215  
:HMM:PFM   49->126 PF07497 * Rho_RNA_bind 4.3e-42 80.8 78/78  
:HMM:PFM   5->47 PF07498 * Rho_N 4.3e-21 55.8 43/43  
:BLT:SWISS 1->418 RHO_PSEAE 0.0 78.5 %
:PROS 144->168|PS00464|RIBOSOMAL_L22

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59045.1 GT:GENE ABA59045.1 GT:PRODUCT transcription termination factor Rho GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(2945628..2946884) GB:FROM 2945628 GB:TO 2946884 GB:DIRECTION - GB:PRODUCT transcription termination factor Rho GB:PROTEIN_ID ABA59045.1 GB:DB_XREF GI:76884364 InterPro:IPR000194 InterPro:IPR001063 InterPro:IPR003593 InterPro:IPR004665 InterPro:IPR011112 InterPro:IPR011113 InterPro:IPR011129 LENGTH 418 SQ:AASEQ MNLTELKTKSASELLDIAQSMGLEGISRLRRQDLIFALLKAHAKNGEDIYGNGVLELLQDGFGFLRSASASYLAGPDDIYVSPSQIRRFGLRTGDTVEGKIRPPKEGERYFALLKVSSINFEPPEQSRNKVLFENLTPLFANERLVLERGNGSTEDLTPRVIDLVVPVGKGQRGLIVSSPKSGKTVMLQNIAQSIAANHPECYLIVLLIDERPEEVTEMARSVRGEVVSSTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQRPKRFFGAARNLEEGGSLTIIATALIDTGSRMDDVIYEEFKGTGNMEIHLERKLAEKRVYPAINISRSGTRREELLTNPENLQKTWILHKLLAPMDEAEAMEFLLSRLKETKTNDEFFNSMKR GT:EXON 1|1-418:0| BL:SWS:NREP 1 BL:SWS:REP 1->418|RHO_PSEAE|0.0|78.5|418/419| PROS 144->168|PS00464|RIBOSOMAL_L22|PDOC00387| BL:PDB:NREP 1 BL:PDB:REP 1->417|1pvoA|e-178|75.5|408/408| RP:PDB:NREP 2 RP:PDB:REP 1->130|1a63A|3e-34|73.8|130/130| RP:PDB:REP 138->418|2dpyA|2e-46|21.4|280/422| RP:PFM:NREP 3 RP:PFM:REP 6->46|PF07498|2e-08|58.5|41/42|Rho_N| RP:PFM:REP 51->126|PF07497|7e-31|75.7|74/75|Rho_RNA_bind| RP:PFM:REP 160->359|PF00006|1e-11|29.2|195/212|ATP-synt_ab| HM:PFM:NREP 3 HM:PFM:REP 160->364|PF00006|2.8e-46|28.0|200/215|ATP-synt_ab| HM:PFM:REP 49->126|PF07497|4.3e-42|80.8|78/78|Rho_RNA_bind| HM:PFM:REP 5->47|PF07498|4.3e-21|55.8|43/43|Rho_N| GO:PFM:NREP 6 GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07498|IPR011112| GO:PFM GO:0006353|"GO:transcription termination"|PF07498|IPR011112| GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07497|IPR011113| GO:PFM GO:0003723|"GO:RNA binding"|PF07497|IPR011113| GO:PFM GO:0006353|"GO:transcription termination"|PF07497|IPR011113| GO:PFM GO:0005524|"GO:ATP binding"|PF00006|IPR000194| RP:SCP:NREP 3 RP:SCP:REP 2->47|1a62A1|3e-16|56.5|46/47|a.140.3.1| RP:SCP:REP 48->125|1a62A2|4e-22|83.3|78/78|b.40.4.5| RP:SCP:REP 129->417|1pv4A3|2e-43|75.2|282/282|c.37.1.11| HM:SCP:REP 1->47|1a62A1|1.1e-12|57.4|47/0|a.140.3.1|1/1|Rho termination factor, N-terminal domain| HM:SCP:REP 48->125|1a62A2|1.6e-35|75.6|78/78|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 89->372|1e79A3|3.4e-75|37.7|268/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1464 OP:NHOMOORG 784 OP:PATTERN --------------------------------------------------1----------------- 1121211111111111111-111111111111111111112111211121121211111111212112221111111111111212221111111111111111111131222222222222222111111111112221111-12-------------------------------------11111111222222222222222222222212222222222222222222111111111111111111111----------11-----11--------------------------------------------------22222222222222222222111222111211211222222222222211323211211111224222222322311111111111-33333233332232223342222221222222332222211111111111212322222222211111111111111111111111122113331433353333323332444524233322211223222222113322223222421111111222122223122122233333222222232333331212222122222222222222222221112411222222224232423222322333321-1222212211132133242442222222-43223322224241221121113343344444444444444442122322352455555445454113111111222211523111111111111111111-1111112133232222322222333111111111122232222244222222222222211-111222222222222222222--------------------------2122222222122 --------------------------------------------------------------------------------------------------------------------------------------------------------------2--------------------------1--------2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 418 STR:RPRED 100.0 SQ:SECSTR cccTTcEEEETTccEEEEEEEccccEEEEcccGGGccTTcEEEccccccccTTcEEEEcccccccEEEEEEEEccETTEEEEEEccccTTccTTcEEEcccEEEccGGGcTcEEcTTccccccccccccEEEcccccccGGGcccccccccccEEccccHHHHHHccEETTcEEEEEEcTTccHHHHHHHHHHHTTTTcccEEEEEEEEcccHHHHHHHHHcccEEEEEEcTTccHHHHHHHHHHHHHHHHHHHHTTccEEEEEEcTHHHHHHHHHHHGGGTccccGGGccTTHHHHHHHHHTTccccccccEEEEEEEEcGGGcTTcHHHHHHGGGcccEEEEccHHHHTTTccccccTTccEETTcHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcGGGccHHHHHHHHHHHH PSIPRED ccHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEEEEEccccccEEccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccEEEEEEEEEcccccccccHHHHHHHcccEEEEEcHHHHHcccccccccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcc //