[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59139.1
DDBJ      :             Transposase
Swiss-Prot:             

Homologs  Archaea  25/68 : Bacteria  105/915 : Eukaryota  0/199 : Viruses  1/175   --->[See Alignment]
g.72.1
:372 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   82->183 3ee7B PDBj 1e-06 11.6 %
:RPS:SCOP  284->332 1wj0A  g.72.1.1 * 2e-12 14.3 %
:RPS:PFM   15->90 PF04840 * Vps16_C 6e-04 30.3 %
:RPS:PFM   146->243 PF01385 * Transposase_2 3e-06 30.6 %
:RPS:PFM   277->330 PF07282 * Transposase_35 9e-11 44.4 %
:HMM:PFM   277->346 PF07282 * Transposase_35 1.5e-28 46.4 69/69  
:HMM:PFM   118->247 PF01385 * Transposase_2 4e-14 26.4 129/227  
:BLT:SWISS 146->332 YDCM_ECOLI 1e-15 29.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59139.1 GT:GENE ABA59139.1 GT:PRODUCT Transposase GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 3041767..3042885 GB:FROM 3041767 GB:TO 3042885 GB:DIRECTION + GB:PRODUCT Transposase GB:PROTEIN_ID ABA59139.1 GB:DB_XREF GI:76884458 InterPro:IPR001959 InterPro:IPR010095 LENGTH 372 SQ:AASEQ MKTTLQIKLLPDGTQHSALKETMRVFNDACNAIAEVAFREQCASKFELQKLVYADVRKQFGLSAQLTIRAIAKVVEAYKRDKSKQCFFKPTGAVVYDQRILSFKGLDRASLVTMQGRVSIPIQMGQYQRVQWHRAKGQADLVLVKGAFFLLVVIDTPEAPPIDPSGFIGIDLGITKVATDSDGGSFCGSTVERVRQRYHRLRRRLQSKGTRSAKRHLKKIRRKEAQFRRSQNHIISKRLVEKAKDTGRGIALEELKHIRSRTTVRKSDRAKHSGWSFFQLQSFIEYKAKLAGVFVQYIDPWYTSRTCSACGHADKANRKTQSHFQCVSCGYTDNADINAAINIAARADVMQPMVMRATTAKDSPSTATSLPL GT:EXON 1|1-372:0| BL:SWS:NREP 1 BL:SWS:REP 146->332|YDCM_ECOLI|1e-15|29.5|183/402| SEG 193->204|rvrqryhrlrrr| SEG 333->348|dnadinaainiaarad| RP:PDB:NREP 1 RP:PDB:REP 82->183|3ee7B|1e-06|11.6|95/115| RP:PFM:NREP 3 RP:PFM:REP 15->90|PF04840|6e-04|30.3|76/313|Vps16_C| RP:PFM:REP 146->243|PF01385|3e-06|30.6|98/207|Transposase_2| RP:PFM:REP 277->330|PF07282|9e-11|44.4|54/70|Transposase_35| HM:PFM:NREP 2 HM:PFM:REP 277->346|PF07282|1.5e-28|46.4|69/69|Transposase_35| HM:PFM:REP 118->247|PF01385|4e-14|26.4|129/227|Transposase_2| GO:PFM:NREP 2 GO:PFM GO:0005737|"GO:cytoplasm"|PF04840|IPR006925| GO:PFM GO:0006886|"GO:intracellular protein transport"|PF04840|IPR006925| RP:SCP:NREP 1 RP:SCP:REP 284->332|1wj0A|2e-12|14.3|49/58|g.72.1.1| OP:NHOMO 407 OP:NHOMOORG 131 OP:PATTERN --------9113---1--------7457B5DG----1------------3112-12--1-2-122--- ---------------------1----------------21---1----------------------1-2------1----------1---------------------2---------------------------1----------36-331Bq------------17---------------4------26--1-1152-----122------1-1U7---1-------1------------------------------6-----1--1---------------------------------------------------1----------1-1---11-----2--1--------1--------------------------------------------------------1-------------------------------------------------------------------------------------------------------------1-----------------71----------------------1----1------------------------------------------------------------1----1---------1------------15-------------3--12211---32-22142-13132-2111111-------B---1-------1-11-21111223-----------------------------------------1--54---------1-4-----------------------------------------------------------------------------------------------------------5-312--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 95 STR:RPRED 25.5 SQ:SECSTR #################################################################################EEEEEEEEccTTTcccEE##EEEEEEc####cccccEEEE#EEEccccccEEEEEcTTcccEEcEEEEEccTTccEEEEEEEcTTccHHHHHHHHHHHHccc############################################################################################################################################################################################# DISOP:02AL 200-215, 350-372| PSIPRED cEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccEEEccEEEEEccccEEEEEEEccEEEEEEEEcEEEEEccccccEEEEEEEEccEEEEEEEEEEccccccccccEEEEEEcccEEEEEcccEEccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccHHHccHHHHHHHHcccHHHHHHHHHHHHHHHccEEEEEccccccccccccccccccccccccEEEEcccccEEccHHHHHHHHHHHcccccccccccccccccccccccccc //