[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59143.1
DDBJ      :             Short-chain dehydrogenase/reductase SDR
Swiss-Prot:             

Homologs  Archaea  21/68 : Bacteria  714/915 : Eukaryota  177/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:232 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->232 1snyA PDBj 5e-26 36.6 %
:RPS:PDB   5->191 1a27A PDBj 5e-27 26.5 %
:RPS:SCOP  5->191 1a27A  c.2.1.2 * 6e-27 26.5 %
:HMM:SCOP  1->232 1snyA_ c.2.1.2 * 1.5e-101 51.5 %
:RPS:PFM   5->171 PF00106 * adh_short 8e-13 35.2 %
:HMM:PFM   5->169 PF00106 * adh_short 9.7e-23 27.3 154/167  
:BLT:SWISS 2->87 POR_PLEBO 4e-10 31.4 %
:BLT:SWISS 77->232 CSGA_MYXXA 2e-38 45.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59143.1 GT:GENE ABA59143.1 GT:PRODUCT Short-chain dehydrogenase/reductase SDR GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 3049756..3050454 GB:FROM 3049756 GB:TO 3050454 GB:DIRECTION + GB:PRODUCT Short-chain dehydrogenase/reductase SDR GB:PROTEIN_ID ABA59143.1 GB:DB_XREF GI:76884462 InterPro:IPR002198 InterPro:IPR002347 LENGTH 232 SQ:AASEQ MPNLLITGTNRGIGLEFSKQYAETGWRVFACCRHPGKADALKQLAAQHPGSLSLHTLDVADFDQIEGLAAELTGEKIDLLVNNAGIYADTFRGGFGATDYQAWLRAFCVNTTAPLKMAETFASQIAQSQQKKIVCISSKMGSIAENTSGGCYLYRSSKAALNMVVKSLSIDLAPRGILAAALHPGWVQTDMGGPNALITTQQSVAGMRQVIEQLTPQQSGGFYAYDSKEIPW GT:EXON 1|1-232:0| BL:SWS:NREP 2 BL:SWS:REP 2->87|POR_PLEBO|4e-10|31.4|86/322| BL:SWS:REP 77->232|CSGA_MYXXA|2e-38|45.5|154/166| BL:PDB:NREP 1 BL:PDB:REP 3->232|1snyA|5e-26|36.6|224/241| RP:PDB:NREP 1 RP:PDB:REP 5->191|1a27A|5e-27|26.5|181/285| RP:PFM:NREP 1 RP:PFM:REP 5->171|PF00106|8e-13|35.2|159/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 5->169|PF00106|9.7e-23|27.3|154/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 5->191|1a27A|6e-27|26.5|181/285|c.2.1.2| HM:SCP:REP 1->232|1snyA_|1.5e-101|51.5|229/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 3238 OP:NHOMOORG 912 OP:PATTERN --1--12---------12-1----3--34322-1------------11------1------1211-1- 45616-1---2211A6544-43--8943444419B9287925164432-53-4332-4--42414427213------121-2311-11--12-1--1--427112J16-311--1-1---11111---111-----111111112173432213311232243221155823122333132133112222-122222221-122232213255233223221442333222382--------------222324-212212-----22---223213331113222211333323333332222222222222222111222121-122222222-2-211113233-----32---111--122211-1----1144421-2-1528762347385422221133224-776746675A3-7994758ADC486864776532443363333333352421335--1-1111-----1----1--1---1-1-13544433333A89BC93545599AA555535C5C5B98-14461-33361317335412322-11-----112541352321111-31112121-4-12--1--23-111111-------1-------2131-33334473546114222424322233222324---13411-----13682643122322233-22322113232133333313654311-4-3333333332323362112222--332333333333--23121-134332355611111111111-231555454544242463456997636559583112122112233344444643111323232111----1--2331122--------1---------------------------1-321-11--131 1---221-41--113AACAF897CCD7331111959442334411-D4CK99EE7DB533452151211111B2532222-2221--4-9O4A5V73122522B98--C6C8A78B1222-12161-31372-3231-112-264-311-3--82A5958872645383878EAJ2364N533572334A4563NDJL4 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 232 STR:RPRED 100.0 SQ:SECSTR ccEEEEcccccHHHHHHHHHHHTcTTccEEEEEEEccGGGTHHHHHccTTcEEEEEccTTcHHHHHHHHHTcTTccccEEEEcccccHHcccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTcEEEEEEEEGGGTccccccTTcHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEccccccTHHHHHTTccHHHHHHHTccccccccTTHTTEccccTTTTTc DISOP:02AL 232-233| PSIPRED ccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHcccccccc //