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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59267.1
DDBJ      :             transcriptional regulator, TetR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  15/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:213 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->54 2dg7A PDBj 4e-05 45.0 %
:RPS:PDB   5->181 3cjdB PDBj 2e-11 13.4 %
:RPS:SCOP  1->68 2iu5A1  a.4.1.9 * 7e-10 20.6 %
:HMM:SCOP  2->70 1ui5A1 a.4.1.9 * 5e-10 31.9 %
:HMM:PFM   11->56 PF00440 * TetR_N 8e-11 39.1 46/47  
:HMM:PFM   150->180 PF08511 * COQ9 1.5e-05 29.0 31/79  
:BLT:SWISS 11->102 BETI_BURPP 7e-05 27.2 %
:BLT:SWISS 111->186 ARLY_LEPIN 6e-04 38.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59267.1 GT:GENE ABA59267.1 GT:PRODUCT transcriptional regulator, TetR family GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 3196829..3197470 GB:FROM 3196829 GB:TO 3197470 GB:DIRECTION + GB:PRODUCT transcriptional regulator, TetR family GB:PROTEIN_ID ABA59267.1 GB:DB_XREF GI:76884586 InterPro:IPR001647 LENGTH 213 SQ:AASEQ MEKIASTSDIILDTALELAEETSWENVRLYHVAQRAGLTLNHIRRYFREKEELVDAWLDRADRAMLDETNCPHFLALSPRERLNQLFMAWLEALSPHRPVMRQMVFNRLEPGHLHMQVASLLRISRTVQWAREAAQREQTFLFRAFDETALTSTYLAAFLCWLNDSTQNYQRTRRLLDRILYLGEVIESLKPSFLRPYQPEENFTPAPPQEAR GT:EXON 1|1-213:0| BL:SWS:NREP 2 BL:SWS:REP 11->102|BETI_BURPP|7e-05|27.2|92/195| BL:SWS:REP 111->186|ARLY_LEPIN|6e-04|38.8|67/470| BL:PDB:NREP 1 BL:PDB:REP 15->54|2dg7A|4e-05|45.0|40/185| RP:PDB:NREP 1 RP:PDB:REP 5->181|3cjdB|2e-11|13.4|172/177| HM:PFM:NREP 2 HM:PFM:REP 11->56|PF00440|8e-11|39.1|46/47|TetR_N| HM:PFM:REP 150->180|PF08511|1.5e-05|29.0|31/79|COQ9| RP:SCP:NREP 1 RP:SCP:REP 1->68|2iu5A1|7e-10|20.6|68/71|a.4.1.9| HM:SCP:REP 2->70|1ui5A1|5e-10|31.9|69/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 15 OP:NHOMOORG 15 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11---------------------------------1-------------1------------------------------------------------------------------------------------------------1---------------------------------1-1-----------------------------------------------------------------------------------------------11----------------------------------------------------------------------------------------------------1111------------------------------1---------1--------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 209 STR:RPRED 98.1 SQ:SECSTR cccccHHHHHHHHHHHHHHHHHcGGGccHHHHHHHHTccHHHHHHHcccHHHHHHHHHHHHHHHHHHHTTTHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcTTccHHHHHHHHHHHHHHHHHHHHHHTTcTTcccGGGHHHHHHHHHHHHHHHHHHHHTcGGGHHHH###HTTTTcc# DISOP:02AL 1-5, 201-213| PSIPRED ccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccccccccc //