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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59272.1
DDBJ      :             translation factor SUA5
Swiss-Prot:RIMN_NITOC   RecName: Full=Putative ribosome maturation factor rimN;

Homologs  Archaea  56/68 : Bacteria  766/915 : Eukaryota  84/199 : Viruses  0/175   --->[See Alignment]
d.115.1
:185 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->185 1hruA PDBj 2e-44 50.6 %
:RPS:PDB   15->96 3c9dA PDBj 1e-08 11.0 %
:RPS:PDB   117->164 2e6gH PDBj 1e-06 10.4 %
:RPS:SCOP  8->185 1hruA  d.115.1.1 * 2e-43 48.6 %
:HMM:SCOP  1->185 1hruA_ d.115.1.1 * 1.1e-48 38.6 %
:RPS:PFM   15->164 PF01300 * Sua5_yciO_yrdC 2e-24 43.3 %
:HMM:PFM   14->179 PF01300 * Sua5_yciO_yrdC 2.4e-44 31.9 166/179  
:BLT:SWISS 1->185 RIMN_NITOC e-106 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59272.1 GT:GENE ABA59272.1 GT:PRODUCT translation factor SUA5 GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(3201105..3201662) GB:FROM 3201105 GB:TO 3201662 GB:DIRECTION - GB:PRODUCT translation factor SUA5 GB:PROTEIN_ID ABA59272.1 GB:DB_XREF GI:76884591 InterPro:IPR006070 LENGTH 185 SQ:AASEQ MACPNWRVRLAARIIRGGGVIAYPTEGVFGLGCDPGRKAAIERILQLKGRSISKGFILIAADFVQLQSYLLPLTASTRSRLEVTWPGPVTWLLPARGDVPPWLRGRYDTLAVRVTAHPLAACLCRTLGHALVSTSANRAGRPPAQTTLQVRRSFGSSLDYILPGITGKRAGPSEIRDGRTGQRLR GT:EXON 1|1-185:0| SW:ID RIMN_NITOC SW:DE RecName: Full=Putative ribosome maturation factor rimN; SW:GN Name=rimN; OrderedLocusNames=Noc_2825; SW:KW Complete proteome; Cytoplasm; Ribosome biogenesis; RNA-binding;rRNA processing. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->185|RIMN_NITOC|e-106|100.0|185/185| GO:SWS:NREP 4 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0042254|"GO:ribosome biogenesis"|Ribosome biogenesis| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0006364|"GO:rRNA processing"|rRNA processing| BL:PDB:NREP 1 BL:PDB:REP 8->185|1hruA|2e-44|50.6|176/184| RP:PDB:NREP 2 RP:PDB:REP 15->96|3c9dA|1e-08|11.0|82/208| RP:PDB:REP 117->164|2e6gH|1e-06|10.4|48/229| RP:PFM:NREP 1 RP:PFM:REP 15->164|PF01300|2e-24|43.3|150/178|Sua5_yciO_yrdC| HM:PFM:NREP 1 HM:PFM:REP 14->179|PF01300|2.4e-44|31.9|166/179|Sua5_yciO_yrdC| RP:SCP:NREP 1 RP:SCP:REP 8->185|1hruA|2e-43|48.6|177/186|d.115.1.1| HM:SCP:REP 1->185|1hruA_|1.1e-48|38.6|184/186|d.115.1.1|1/1|YrdC/RibB| OP:NHOMO 1187 OP:NHOMOORG 906 OP:PATTERN 111-11111111111111111111---11111111--1-----1111111111111111111111-11 222--11111111111111-11--1111111111111211-1112121111-2121--11111222211221---1111-11------111112111--12222222212-111111-11----111111111111111111111111111122211------12121111---------------1111111111111111111111-11111111111111111111111111111111111111-111111111111111111111-111111111-1-111111111111111111111111111111111111-111111111111111111111111111111-1111111111111111111111-2111---11111111-11111111111111111111-11-11-11111-1111112111111111-1111111-1111111111---1111---1111111111-1111-1--1--1-1----11-1111112222221222222122222222212222-1222---1111111-1122222322222222222221122221111-1111111111111111112222-------------------------332221222212231111212111111211121-1222211-11122222312222222222-222222222222222222222222222222222222222222222222222212222222222221122222222222222222222222222222222222222111222222222232222222211111111122221333332223311111111111111112-1-----13111111---11-1---------------------1111111111111 ----11----1111121-11111-1-1--11-1111-1-11-11-111111111---------1-1------1111----111-111--1-111-1----12111111211----1-----------------------------------------1-----1-----1-----111--111----121-12-11111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 181 STR:RPRED 97.8 SQ:SECSTR ####cEEEEEEEEEEcccEEEEccccccccGGGTTTcTTTcccTTcHHHHHHHHHHHTcHHHHccTTcccTTHHHHHHHHHHTHHHHHHHHHHHHHTTccHHHHTTccEEEEEEccHHHHHHHTTccEEEEcEEcccccccccEEEEEcccccTTcccEEEEEccccccccccEEEETTTccccc DISOP:02AL 1-3| PSIPRED ccccHHHHHHHHHHHHcccEEEEEccccEEEEEccccHHHHHHHHHHHcccccccEEEEEccHHHHHHHHccccHHHHHHHHHHccccEEEEEEccccccHHHcccccEEEEEccccHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHHcccEEEEEEccccccccccEEEEccccEEEc //