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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59289.1
DDBJ      :             ribonuclease E
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  711/915 : Eukaryota  14/199 : Viruses  0/175   --->[See Alignment]
b.40.4c.1.16d.14.1g.3.5
:764 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->495 2bx2L PDBj e-172 67.1 %
:RPS:PDB   1->513 2c0bL PDBj 8e-51 63.9 %
:RPS:SCOP  40->125 1smxA  b.40.4.5 * 4e-33 72.9 %
:RPS:SCOP  107->196 1a6fA  d.14.1.2 * 6e-19 24.4 %
:RPS:SCOP  169->259 1m41A  c.1.16.4 * 2e-05 14.8 %
:RPS:SCOP  391->429 1hykA  g.3.5.1 * 2e-06 16.2 %
:HMM:SCOP  39->126 1smxA_ b.40.4.5 * 2.5e-19 41.4 %
:RPS:PFM   37->119 PF00575 * S1 1e-11 47.9 %
:RPS:PFM   122->392 PF10150 * RNase_E_G 3e-75 55.9 %
:RPS:PFM   495->560 PF08907 * DUF1853 6e-04 30.8 %
:HMM:PFM   122->393 PF10150 * RNase_E_G 3.6e-105 49.6 270/271  
:HMM:PFM   36->119 PF00575 * S1 9.7e-17 31.9 72/74  
:BLT:SWISS 1->558 RNE_HAEIN 0.0 59.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59289.1 GT:GENE ABA59289.1 GT:PRODUCT ribonuclease E GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(3217844..3220138) GB:FROM 3217844 GB:TO 3220138 GB:DIRECTION - GB:PRODUCT ribonuclease E GB:PROTEIN_ID ABA59289.1 GB:DB_XREF GI:76884608 InterPro:IPR003029 InterPro:IPR004659 LENGTH 764 SQ:AASEQ MKRMLINATHAEELRVAMVDGQYLQDLDIENPAREQKKANIYKGKITRIEPSLDAVFVDYGADRQGFLPLKEVTRSYFQSHQGESGDRPKVQDVLKEGQELVVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPRAGGVSRRIEGEERSMLLEAMRTLEIPEGMGLITRTAAVGKNAEELQWDLNYLLHLWHSIQAAAEGRPAPFLIYQESDVIIRALRDYLRLDIGEILIDTPDVYQRAYDFMRQVMPPELRKLKLYQDKVSLFTRFQIESQIETAFQHEVALPSGGAIVVDYTEALTTIDINSARANKGEDIEETALSTNLEAAEEIARQLRLRDLGGLIVIDFIDMAPLRNQRAVENRLRECLREDRARVQVGRISRFGLLEMSRQRLRPSLGEAHQVVCPRCNGRGQVRGVESLGLSVLRLIEEGAAKEKTARMVIQLPISVASFLLNEKRANLAAIEKRYGAHLFLVPNSHLETPVFEIERIKDVGKGESRVDKRFEMQSYQMANEPSPKKPALLTPSAIPDEPLVKAGSPLFPKPEPQPVAPKAEPDFLRRFWTAFMKGDQELDVAEVVTQETEVVSEETGERGRLPPRRGRSQGRGRRGSGRQHNRKENTQGNEGSGVSSGAESGQAASEAKETQDMQNGTESSSAPSSRTTTRGRRGGRRRRVNATGRYRHRSGRKEEEETKRPEEAQYPEKDSLPSSTVLTTPPAKSPLEETASDRKKAPSEEGREGLSQEPESPGPTKVGVEREQAAAVKEPL GT:EXON 1|1-764:0| BL:SWS:NREP 1 BL:SWS:REP 1->558|RNE_HAEIN|0.0|59.2|554/935| SEG 572->611|vaevvtqetevvseetgergrlpprrgrsqgrgrrgsgrq| SEG 622->641|egsgvssgaesgqaaseake| SEG 648->679|gtesssapssrtttrgrrggrrrrvnatgryr| SEG 684->695|rkeeeetkrpee| BL:PDB:NREP 1 BL:PDB:REP 1->495|2bx2L|e-172|67.1|474/500| RP:PDB:NREP 1 RP:PDB:REP 1->513|2c0bL|8e-51|63.9|476/488| RP:PFM:NREP 3 RP:PFM:REP 37->119|PF00575|1e-11|47.9|71/74|S1| RP:PFM:REP 122->392|PF10150|3e-75|55.9|270/271|RNase_E_G| RP:PFM:REP 495->560|PF08907|6e-04|30.8|65/271|DUF1853| HM:PFM:NREP 2 HM:PFM:REP 122->393|PF10150|3.6e-105|49.6|270/271|RNase_E_G| HM:PFM:REP 36->119|PF00575|9.7e-17|31.9|72/74|S1| GO:PFM:NREP 1 GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 4 RP:SCP:REP 40->125|1smxA|4e-33|72.9|85/87|b.40.4.5| RP:SCP:REP 107->196|1a6fA|6e-19|24.4|90/113|d.14.1.2| RP:SCP:REP 169->259|1m41A|2e-05|14.8|88/328|c.1.16.4| RP:SCP:REP 391->429|1hykA|2e-06|16.2|37/46|g.3.5.1| HM:SCP:REP 39->126|1smxA_|2.5e-19|41.4|87/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 1029 OP:NHOMOORG 725 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-1111111111111111111111111111111111111111111111111111111111-----11111111111111--1111111111111111111111111111111111111----------1111111111111111111111111111111111111-------1---11111111111111111----111-----1111111111------------------------------------------------------------------------------------------11111111111111111111111111-1111111111111-111111-1-1111221-1111111111111111111111111111-1111111111211111111111111122211111111111111111111112121111111111111111111111111111111111112222222232222222222222222222222221222222222222222222222222222222222222212222111111111122222222211111112-------------------------222222222222222222222222222222221-2222211-11122222222222222222-222222222222212222222222222222222222222222222222222212222222222221122111111111212222222222222122222222222222222222222222222222222222222222222222222222222222222222222111-------------------------------------------1111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------1----2------1-------11122--1111-41------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 511 STR:RPRED 66.9 SQ:SECSTR cEEEEEEcccTTcEEEEEEETTEEEEEEEEcccccccTTcEEEEEEEEEETTTTEEEEEccccccEEEEGGGccGGGcccccGGGTccTTcHHHHHHHTccTTccccHHHHHHHHHHHHHTTcTTccHHHHHHHHHHHHHHHHcTTcTTHHHHHHHHHHHcEEcccEEEEEcccccccHHHHHHHHHHHHHcTTcEEEEEEcTTcTTHHHHHHHHHHHHHHHHHHHHGGGGTcccHHHHHHHHHHHHHHHHHHHHHHHHHHcTTccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHTTTEEEGGGcHHHHTcTHHHHHTcccHHHHHHHHHHHHHHHHcEEEEEcTTcEEcccTTTTTTccccTTccHHHHHHHHHHHHHHHHcccTTcccTTGGHHHGccHHHHHHHHHHHHTcccGGGTcccccccEEcTTccEEEEETTEEEEEEEcTTcHHHHHHHHHHHHHHHHEEEEcTTccTTccEEEEEET##TTc###TccccccGGGHHHHHTTT######################################################################################################################################################################################################################################################## DISOP:02AL 83-88, 486-764| PSIPRED ccEEEEEcccccEEEEEEEEccEEEEEEEEccccccccccEEEEEEEEEEccccEEEEEEccccccEEEHHHccHHHcccccccccccccHHHHHccccEEEEEEEEEcccccccccEEEEEEcEEEEEEcccccEEEEEEEEcccHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHcHHHHHHHHHccEEEcccccEEEEEccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEEccccccEEEEEccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHcccHHHHHHHHHHHccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc //