[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59304.1
DDBJ      :             D-alanine--D-alanine ligase
Swiss-Prot:DDL_NITOC    RecName: Full=D-alanine--D-alanine ligase;         EC=6.3.2.4;AltName: Full=D-alanylalanine synthetase;AltName: Full=D-Ala-D-Ala ligase;

Homologs  Archaea  3/68 : Bacteria  859/915 : Eukaryota  10/199 : Viruses  0/175   --->[See Alignment]
c.30.1d.142.1
:316 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   12->303 1iovA PDBj 2e-81 53.6 %
:RPS:PDB   12->309 3e5nA PDBj 9e-37 33.0 %
:RPS:SCOP  12->102 1ehiA1  c.30.1.2 * 2e-23 29.7 %
:RPS:SCOP  104->308 1e4eA2  d.142.1.1 * 1e-45 27.6 %
:HMM:SCOP  9->104 1iowA1 c.30.1.2 * 1.3e-29 54.8 %
:HMM:SCOP  105->304 1iowA2 d.142.1.1 * 1.7e-53 36.0 %
:RPS:PFM   12->94 PF01820 * Dala_Dala_lig_N 1e-13 50.6 %
:RPS:PFM   111->303 PF07478 * Dala_Dala_lig_C 1e-35 40.9 %
:HMM:PFM   111->303 PF07478 * Dala_Dala_lig_C 1.8e-56 38.9 193/203  
:HMM:PFM   12->53 PF01820 * Dala_Dala_lig_N 2e-12 47.6 42/117  
:HMM:PFM   60->94 PF01820 * Dala_Dala_lig_N 2.9e-13 54.3 35/117  
:BLT:SWISS 1->316 DDL_NITOC e-170 100.0 %
:PROS 71->82|PS00843|DALA_DALA_LIGASE_1
:PROS 249->277|PS00844|DALA_DALA_LIGASE_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59304.1 GT:GENE ABA59304.1 GT:PRODUCT D-alanine--D-alanine ligase GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(3236686..3237636) GB:FROM 3236686 GB:TO 3237636 GB:DIRECTION - GB:PRODUCT D-alanine--D-alanine ligase GB:PROTEIN_ID ABA59304.1 GB:DB_XREF GI:76884623 InterPro:IPR000291 InterPro:IPR005905 InterPro:IPR011095 InterPro:IPR011127 LENGTH 316 SQ:AASEQ MIGRVDVKAWGKVVVLMGGYSAEREISLKSGTAVLQSLLRQGIEAHGIDVDKGVLTQLSKGQFTRAFIALHGRGGEDGVIQGVLETLNLPYTGSGVLGSALTMDKLRSKRLWRGMDLPTADFSVLTRDTNPALIAADLGLPLIVKPAREGSSLGMMKVESIEALQSAYREAVIFDTAVFAERWLPGAEYTAAILADRVLPLIRLETPRVFYDFEAKYHANTTRYFCPCGLSEKQEQDLQALALEAFQALGASGWGRVDLRCDEKAHPYLLEINTVPGMTDHSLVPMAAQAAGIEFDEMVLQILASSLERRMFQDGT GT:EXON 1|1-316:0| SW:ID DDL_NITOC SW:DE RecName: Full=D-alanine--D-alanine ligase; EC=6.3.2.4;AltName: Full=D-alanylalanine synthetase;AltName: Full=D-Ala-D-Ala ligase; SW:GN Name=ddl; OrderedLocusNames=Noc_2858; SW:KW ATP-binding; Cell shape; Cell wall biogenesis/degradation;Complete proteome; Cytoplasm; Ligase; Magnesium; Manganese;Metal-binding; Nucleotide-binding; Peptidoglycan synthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->316|DDL_NITOC|e-170|100.0|316/316| GO:SWS:NREP 8 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0008360|"GO:regulation of cell shape"|Cell shape| GO:SWS GO:0007047|"GO:cellular cell wall organization"|Cell wall biogenesis/degradation| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0009252|"GO:peptidoglycan biosynthetic process"|Peptidoglycan synthesis| PROS 71->82|PS00843|DALA_DALA_LIGASE_1|PDOC00659| PROS 249->277|PS00844|DALA_DALA_LIGASE_2|PDOC00659| SEG 234->249|qeqdlqalaleafqal| BL:PDB:NREP 1 BL:PDB:REP 12->303|1iovA|2e-81|53.6|291/306| RP:PDB:NREP 1 RP:PDB:REP 12->309|3e5nA|9e-37|33.0|285/340| RP:PFM:NREP 2 RP:PFM:REP 12->94|PF01820|1e-13|50.6|83/108|Dala_Dala_lig_N| RP:PFM:REP 111->303|PF07478|1e-35|40.9|193/199|Dala_Dala_lig_C| HM:PFM:NREP 3 HM:PFM:REP 111->303|PF07478|1.8e-56|38.9|193/203|Dala_Dala_lig_C| HM:PFM:REP 12->53|PF01820|2e-12|47.6|42/117|Dala_Dala_lig_N| HM:PFM:REP 60->94|PF01820|2.9e-13|54.3|35/117|Dala_Dala_lig_N| GO:PFM:NREP 5 GO:PFM GO:0005618|"GO:cell wall"|PF01820|IPR011127| GO:PFM GO:0008716|"GO:D-alanine-D-alanine ligase activity"|PF01820|IPR011127| GO:PFM GO:0009252|"GO:peptidoglycan biosynthetic process"|PF01820|IPR011127| GO:PFM GO:0008716|"GO:D-alanine-D-alanine ligase activity"|PF07478|IPR011095| GO:PFM GO:0009252|"GO:peptidoglycan biosynthetic process"|PF07478|IPR011095| RP:SCP:NREP 2 RP:SCP:REP 12->102|1ehiA1|2e-23|29.7|91/132|c.30.1.2| RP:SCP:REP 104->308|1e4eA2|1e-45|27.6|203/211|d.142.1.1| HM:SCP:REP 9->104|1iowA1|1.3e-29|54.8|93/0|c.30.1.2|1/1|PreATP-grasp domain| HM:SCP:REP 105->304|1iowA2|1.7e-53|36.0|200/0|d.142.1.1|1/1|Glutathione synthetase ATP-binding domain-like| OP:NHOMO 1072 OP:NHOMOORG 872 OP:PATTERN --------------------------------------------------1-1--------------1 121-311111121111111-11111111111111111111221312112331111111112232222121211111112221211211111111112--1111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111121222212222221111112221112111111111331111111111111111111121111111111111111111111111111111111111111121111111111111111111111111111421111111111111211122132111111112211111111112111111-211111111114221111111122222222221-111111111211211123222211111111131111111111111111111111111--------111111111111111111111111111111111111111111112111111211111111111111111111111111111211111111111111112211111111111111111111222243221111111111-11--1111111111111111111111212---111111-1111-111-1112111----22112212222222222-2222222222222122222222111112221222222222212222222221121111111111111111111111111121111111111111111111111111111122221212121331222111-111111111211111111112212222222111111111111111111111111--------------------------1212213111111 -----------------------------------------------------------111---------------------------------1-------------------------------------------------------------------1---------1----1------2--1---------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 306 STR:RPRED 96.8 SQ:SECSTR #########TTEEEEEEEcccTTHHHHHHHHHHHHHHccTTTEEEEEEEEcTTccEEEEcGGGcEEEEEEccHHHHccHHHHHHHHTTcccccccHHHHHHHHcHHHHHHHHHHTTcccccEEEEEHHHHTTHHHHHHcccEEEEEccccccTTcEEEccGGGHHHHHHHHTTTccEEEEEEccccEEEEEEEEcccTccEEcccEEcGGccEEEEEEEEcccEEccccccHHHHHHHHHHHHHHHHHHTcccEEEEEEEEcTTccEEEEEEEccccccTTcHHHHHHHTTTccHHHHHHHHHHHHHHHEEEEEc# DISOP:02AL 1-7, 311-316| PSIPRED ccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHccccEEEEcccccccccHHHHHHHHHccccEEcccHHHHHHHHcHHHHHHHHHHccccccccEEEcccHHHHHHHHHccccEEEEEccccccEEEEEEccHHHHHHHHHHHHHcccEEEEEEcccccEEEEEEEcccEEEEEEEEcccEEEcccccEEcccEEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccEEEEEEccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccc //