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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59343.1
DDBJ      :             Ribonuclease R
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  781/915 : Eukaryota  196/199 : Viruses  0/175   --->[See Alignment]
a.4.5b.40.4
:722 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   101->662 2ix0A PDBj 1e-41 30.8 %
:BLT:PDB   642->721 1go3E PDBj 5e-09 35.5 %
:RPS:PDB   38->151 1a8vB PDBj 6e-19 23.2 %
:RPS:PDB   177->721 3bzcA PDBj 5e-70 12.3 %
:RPS:SCOP  23->81 2g9wA1  a.4.5.39 * 2e-04 13.8 %
:RPS:SCOP  74->148 2id0A3  b.40.4.5 * 3e-14 26.8 %
:RPS:SCOP  191->639 2r7dA2  b.40.4.16 * e-113 24.9 %
:RPS:SCOP  639->721 2id0A1  b.40.4.5 * 7e-20 15.7 %
:HMM:SCOP  92->158 1a62A2 b.40.4.5 * 6.8e-08 34.8 %
:HMM:SCOP  638->721 1go3E1 b.40.4.5 * 3.8e-21 42.7 %
:RPS:PFM   26->90 PF08461 * HTH_12 9e-11 56.5 %
:RPS:PFM   92->149 PF08206 * OB_RNB 4e-12 48.3 %
:RPS:PFM   168->218 PF08206 * OB_RNB 9e-06 41.2 %
:RPS:PFM   265->591 PF00773 * RNB 5e-84 49.4 %
:RPS:PFM   639->719 PF00575 * S1 3e-05 39.1 %
:HMM:PFM   265->592 PF00773 * RNB 2.3e-103 44.7 320/326  
:HMM:PFM   92->149 PF08206 * OB_RNB 4e-24 46.6 58/58  
:HMM:PFM   168->217 PF08206 * OB_RNB 0.00073 34.0 47/58  
:HMM:PFM   638->720 PF00575 * S1 2.2e-14 35.2 71/74  
:HMM:PFM   26->80 PF08461 * HTH_12 5.1e-11 34.0 53/66  
:BLT:SWISS 1->721 RNR_VIBCH 0.0 55.0 %
:PROS 560->584|PS01175|RIBONUCLEASE_II
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59343.1 GT:GENE ABA59343.1 GT:PRODUCT Ribonuclease R GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(3275464..3277632) GB:FROM 3275464 GB:TO 3277632 GB:DIRECTION - GB:PRODUCT Ribonuclease R GB:PROTEIN_ID ABA59343.1 GB:DB_XREF GI:76884662 InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805 LENGTH 722 SQ:AASEQ MSDWKKKDPYFARETQKYGQPIPSREYIMQCLERRGRPMTRKELIKTLKLDSGEEVREAFRRRLRAMERDGQLMRNRRRAYGLVHKMDLVRGRIIGHKDGFGFLVPDEGGEDLYLSARQMRAVLHGDRAVAQVTGIDRRGRREGAVIEVLERNNHRVVGRFVAEDTLGFLVPSNQRLSQDILIPLEHQEGAQDNQIVVAEITEQPTAKRQPIGRIVELLGDHMAPGMEMDIALQIHELPHVWPEEVLTEAKVFKTTVPRKAKAGRLDLRDLPLVTIDGEDAQDFDDAVYAERHDQGWRLWVAIADVSWYVQPYSALDSEAEKRGNSVYFPSRVIPMLPEALSNGLCSLNPKVDRLCLVCEMVIGPRGGLNSFRFHSGVMRSAARLTYHQAAALLEGSDRKLQERYKTVLPGLEAMHSLYQVLHKARARRGAIDFEMGETQIIFDEAQKIKDIQPLVRNDAHRLIEEFMILANVAAARFLTQHKVPTLYRVHERPADDKLVDLHKFLAELGLALQGGESPGAKDFARFLRSVQERPDAHLIQTVILRTFKQAVYSPDNHGHFGLSLPVYTHFTSPIRRYPDLLVHRAIRHVLEQRSAKTFLYTQDEMMALGEHCSMTERRADEATRDAEDWLKCEYMKDRVGESFDGLITGVTSFGLFVELSDIYVEGLVHVTALGNDYFHFDPAGRRLLGEHTRQVYRLADKVRVMVVRVDLDEKKIDLELA GT:EXON 1|1-722:0| BL:SWS:NREP 1 BL:SWS:REP 1->721|RNR_VIBCH|0.0|55.0|717/821| PROS 560->584|PS01175|RIBONUCLEASE_II|PDOC00904| SEG 506->517|laelglalqgge| BL:PDB:NREP 2 BL:PDB:REP 101->662|2ix0A|1e-41|30.8|533/637| BL:PDB:REP 642->721|1go3E|5e-09|35.5|76/177| RP:PDB:NREP 2 RP:PDB:REP 38->151|1a8vB|6e-19|23.2|112/116| RP:PDB:REP 177->721|3bzcA|5e-70|12.3|529/730| RP:PFM:NREP 5 RP:PFM:REP 26->90|PF08461|9e-11|56.5|62/62|HTH_12| RP:PFM:REP 92->149|PF08206|4e-12|48.3|58/60|OB_RNB| RP:PFM:REP 168->218|PF08206|9e-06|41.2|50/60|OB_RNB| RP:PFM:REP 265->591|PF00773|5e-84|49.4|324/327|RNB| RP:PFM:REP 639->719|PF00575|3e-05|39.1|69/74|S1| HM:PFM:NREP 5 HM:PFM:REP 265->592|PF00773|2.3e-103|44.7|320/326|RNB| HM:PFM:REP 92->149|PF08206|4e-24|46.6|58/58|OB_RNB| HM:PFM:REP 168->217|PF08206|0.00073|34.0|47/58|OB_RNB| HM:PFM:REP 638->720|PF00575|2.2e-14|35.2|71/74|S1| HM:PFM:REP 26->80|PF08461|5.1e-11|34.0|53/66|HTH_12| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF00773|IPR001900| GO:PFM GO:0004540|"GO:ribonuclease activity"|PF00773|IPR001900| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 4 RP:SCP:REP 23->81|2g9wA1|2e-04|13.8|58/119|a.4.5.39| RP:SCP:REP 74->148|2id0A3|3e-14|26.8|71/78|b.40.4.5| RP:SCP:REP 191->639|2r7dA2|e-113|24.9|394/401|b.40.4.16| RP:SCP:REP 639->721|2id0A1|7e-20|15.7|83/87|b.40.4.5| HM:SCP:REP 92->158|1a62A2|6.8e-08|34.8|66/78|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 638->721|1go3E1|3.8e-21|42.7|82/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 1624 OP:NHOMOORG 990 OP:PATTERN ------------------------11111111-----------11-11----1--------------- 212-11-11111--1---------------------1122-----111----111111----1---11----------1-11111111111111111--1111111111111111111111111222111111111----------7433222222221222222222222-2221112-22122222---1111111111111111111111111111111111111111111111111111111111111111111111111111111111111222111111111111111111111111111111111111111111111111111111111111111111111111111-1-----111111111-11-11111111111111111111111111111111111-11112111121-11111111111111111111111111111111111111-1111------------------------------1211111111111111111111111111111111111111111111111222-11111111111111111111111111122222221112111111111111122-11111111111111111111111111112221221122211111111111111111112-1111-21122222222222222222222-2222222222222222222222222222222222222222222222222222-222222222222--2111111111111321222222222122222111111111112111111111111111111111111111222222222132221111111111111112-2111111---------11----1-11111111111111111111111111111-11 3311552-822233322222332332322222222222222222222222222221222222222232-2322223323321112222-22222222222222987132696533594231344D9173DT537553322433342342444353444322124722422222322123P3444432152242243441 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 685 STR:RPRED 94.9 SQ:SECSTR ####################################HcccHHHHHTccHHHHHHHHHHHHTcccGGGccHHHHHHHHHHHHHTTTccEEEEEEEEEcTTccEEEEccccTHHHHGGGccccTccTTcccHHHHHHHTTTHHHHHHHHHcTTccHHHHHHTTccccccEEEEEccTTcccccccccHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHcEEEEEEcGGGcGGGGGGGGGcEEEEEGGGccHHHHHHHHTccccccEEEEEEEEEEcccccTTcccHHHHHHHHHTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccccEEEEEccccccEEEEEEcTTccEEEEEGccHHHHHHHHHHHHHHHTccEEEEEccTTHHHHHGccEEEEEccHHHHHHHHcHHHHHHcTTccHHHHHHHHHHHHHHcHHHHHTTccGGGGTccTTGGGccHHHHHHHHHHHHHHHHHHHcEETTTccHHHHHHHHHHHHHHHHHcccccGGGGGGcTTccHHHHHHHGGGEEcTTcccGGGGccccGGGHHHHHHHHHHHTccHHHHTTcHHHHHHccGGTccccccHHHHHHHHHHHHcTTccccccccTTTTcccccccTTccTTcccccEEEEEETTEEEEEcHccccEEEEETTTccccccGGGGccHHHHHccHHHHccTTccccccEEEEETTTTEEEEcc# DISOP:02AL 1-19, 136-140| PSIPRED cccccccccHHHHHHHHcccccccHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccEEEEEcccEEEEcccccEEEEEEEEccccEEEEEEEcccccEEEcHHHHcccccccEEEEEEEEcccccccccEEEEEEEccccEEEEEEEEcccEEEEEEcccccccEEEEccHHHcccccccEEEEEEEEEcccccccEEEEEEEEcccccccHHHHHHHHHccccccccHHHHHHHHHcccccccHHHHccccHHHcEEEEEccccccccccEEEEEEcccEEEEEEEEccHHHHcccccHHHHHHHHHccEEEEcccccccccHHHHHHHHHccccccEEEEEEEEEEcccccEEEEEEEEEEEEccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEccccccEEEEcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHcccEEcccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEcccEEEEEcccccEEEEEccccccccEEEcccccEEEEcccccEEEcccEEEEEEEEEEHHHcEEEEEEc //