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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59402.1
DDBJ      :             Dihydrouridine synthase TIM-barrel protein yjbN
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  812/915 : Eukaryota  179/199 : Viruses  0/175   --->[See Alignment]
c.1.4
:337 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   53->276 1vhnA PDBj 2e-10 24.2 %
:RPS:PDB   24->320 3c52B PDBj 6e-33 9.2 %
:RPS:SCOP  21->335 1vhnA  c.1.4.1 * 2e-62 20.5 %
:HMM:SCOP  20->336 1vhnA_ c.1.4.1 * 7.8e-80 37.5 %
:RPS:PFM   23->316 PF01207 * Dus 4e-51 43.3 %
:HMM:PFM   24->324 PF01207 * Dus 1.8e-93 37.6 290/310  
:BLT:SWISS 21->336 DUSA_VIBVU e-124 64.1 %
:PROS 103->121|PS01136|UPF0034

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59402.1 GT:GENE ABA59402.1 GT:PRODUCT Dihydrouridine synthase TIM-barrel protein yjbN GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 3346098..3347111 GB:FROM 3346098 GB:TO 3347111 GB:DIRECTION + GB:PRODUCT Dihydrouridine synthase TIM-barrel protein yjbN GB:PROTEIN_ID ABA59402.1 GB:DB_XREF GI:76884721 InterPro:IPR001269 InterPro:IPR003009 InterPro:IPR004653 LENGTH 337 SQ:AASEQ MLFSYDCKKTIQMADYSKAYKISVAPMMEWTDRHCRYFLRLISHRALLYTEMVTAGALIHGNRARFLAYHKSEHPLALQLGGSHPEELALCAQMAEDYGFDEVNLNVGCPSNRVQSGRFGACLMAEPELVAECVAAMAQATQIPVTVKTRIGIDEQDSYEALDHFISTVAQAGCRTFIIHARKAWLQGLSPKENREKPPLRYDVVRTIKQDFPQLTVIINGGITTLEEISEHLELLDGVMIGRAAYHNPYLLAQVDRNFYGDFHPFLTRHEIIEAFLPYVAEQLVQGVYLNHMTRHILGLFQGQPGARAWRRHLSENAHRPGAGIEIIREALRQMPC GT:EXON 1|1-337:0| BL:SWS:NREP 1 BL:SWS:REP 21->336|DUSA_VIBVU|e-124|64.1|315/326| PROS 103->121|PS01136|UPF0034|PDOC00874| BL:PDB:NREP 1 BL:PDB:REP 53->276|1vhnA|2e-10|24.2|207/299| RP:PDB:NREP 1 RP:PDB:REP 24->320|3c52B|6e-33|9.2|284/295| RP:PFM:NREP 1 RP:PFM:REP 23->316|PF01207|4e-51|43.3|282/303|Dus| HM:PFM:NREP 1 HM:PFM:REP 24->324|PF01207|1.8e-93|37.6|290/310|Dus| GO:PFM:NREP 4 GO:PFM GO:0008033|"GO:tRNA processing"|PF01207|IPR001269| GO:PFM GO:0017150|"GO:tRNA dihydrouridine synthase activity"|PF01207|IPR001269| GO:PFM GO:0050660|"GO:FAD binding"|PF01207|IPR001269| GO:PFM GO:0055114|"GO:oxidation reduction"|PF01207|IPR001269| RP:SCP:NREP 1 RP:SCP:REP 21->335|1vhnA|2e-62|20.5|297/305|c.1.4.1| HM:SCP:REP 20->336|1vhnA_|7.8e-80|37.5|299/305|c.1.4.1|1/1|FMN-linked oxidoreductases| OP:NHOMO 1884 OP:NHOMOORG 996 OP:PATTERN -------------------------------------------------1111--------------1 111-11-11111-111111-111111111111-1111111----11111111111111--1---111111-11111111-11-1----111111111--111111211111111111111111121111111111111111---1-221122211222222222211222122122222221222211--1112222222222222222111122222-113121-----112111111111111111111112111111111133111111111111111111111--11111111-11111111111111111111111111111111111111111111111211111-12111-11--11111111-121-2111211111222222222221222122222111-11121111212122222222222222222222212222211111111111111121111111111111111111-111111-111111112222222222211111112211111222232322233322211222121222111133333333311112232113211-12111-121121121----21111111111111--1-------11-1111333333323233333333333333333333--21212--1---33333333333333333-3333333333333333333333333333333333333333333322233331-333333333333--121111122222323333333332332333333333333333333333333333333333222222222233333233233333222222222211111-1133222222222222111----1---1--------1--------11--111-1-1- 2122445-31323332211111111111111111-11111111111-1111111-11-111-222122222232311-1122222223-14-221321-211266423937374444111-14263-2-6F4-33811--412322221-6--5255444542434-422223342444R7644443441439433334 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 337 STR:RPRED 100.0 SQ:SECSTR HHcTccGGHHHcEEcccHHHHGGcccHHHHHHHHHHHTccEHHHHHHHHHHHHTccEEEEEEHHHHHHHcHHHHHHHHHHHHHHcTTccEEEEEEEEccHHHHHHHHHHTccEEEEccTTccHHHHHHHHHHHHHHHHHHHHTTcEEEEEEccccccccccHHHHHHHHHHHcccEEEEccccccHHHTccccccccccccHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHTTcccTTcccccHHHHHHHHHHTEEEEEEcccccHHHHHHHHHHHHHHHHHcTTcccHHHHHHHHHHHHHHHHHHHHHHHTcTTcccTcccccHHHHHHHcE DISOP:02AL 1-2| PSIPRED ccccccccccEEEcEEEEcccEEEEccccccHHHHHHHHHHHccccEEEEcEEEcHHHHcccHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHccccEEEEccccccHHHHcccccccccccHHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEccHHHccccccccccccccccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHccc //