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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59412.1
DDBJ      :             Cytochrome c oxidase, subunit I
Swiss-Prot:             

Homologs  Archaea  23/68 : Bacteria  192/915 : Eukaryota  27/199 : Viruses  0/175   --->[See Alignment]
f.24.1
:499 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   228->465 1m57A PDBj 2e-15 21.9 %
:RPS:SCOP  226->466 1ehkA  f.24.1.1 * 2e-13 20.4 %
:HMM:SCOP  8->495 1m56A_ f.24.1.1 * 5.4e-65 22.7 %
:RPS:PFM   235->404 PF00115 * COX1 1e-08 27.9 %
:HMM:PFM   24->471 PF00115 * COX1 6.5e-45 25.8 426/447  
:BLT:SWISS 228->466 COX1_PISOC 7e-16 27.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59412.1 GT:GENE ABA59412.1 GT:PRODUCT Cytochrome c oxidase, subunit I GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(3355841..3357340) GB:FROM 3355841 GB:TO 3357340 GB:DIRECTION - GB:PRODUCT Cytochrome c oxidase, subunit I GB:PROTEIN_ID ABA59412.1 GB:DB_XREF GI:76884731 InterPro:IPR000883 LENGTH 499 SQ:AASEQ MSTTTVSNKISYSEAENQGALVAVKAHLIAAFLVFLLMMLAGATLRAAQGNMAPIGADVFYQFMTVHGAGMIGIAAIAGMAVLWYFLRQYVPLSTKIFWINFGIFLTGVVIILGSVFLGKYGGAWTFLYPLPGISMGAWSTGAAAAFLLGLLIIGTGFLILLLDFGRAILSSYGSFGRALGLPQLFGKEPLNPYHPATVVAGTMVLIVDFIGIAAGAVVLVMMLVNLYNPEFKPDPLLVKNLIYFFGHVIINVAIYSAVVAIYELLPRYTGRPYKTSKVFYAAWFAIVFMVMSVYPHHLYMDFPMPKWAMIGAQILSYGSGLPVMVVTGYGALMLVYRSGIRWNTSAKLLMLSIFGWAAGGIPAVVDSMVSFNRVLHNTMWVPGHFHFYLLLGVLPMIFGFTFYLLNGANGAQEEKPPLTERLGFYSFVGGALLFVGGFLASGASGIPRRWAVHLEEWVPYAQWSTLGAVLVIVGVLLFTLRVLTVLPKAPDPALAPAH GT:EXON 1|1-499:0| BL:SWS:NREP 1 BL:SWS:REP 228->466|COX1_PISOC|7e-16|27.6|225/517| TM:NTM 12 TM:REGION 21->43| TM:REGION 65->87| TM:REGION 98->120| TM:REGION 144->166| TM:REGION 201->223| TM:REGION 240->262| TM:REGION 276->298| TM:REGION 312->334| TM:REGION 348->370| TM:REGION 385->407| TM:REGION 424->446| TM:REGION 466->488| SEG 30->43|aaflvfllmmlaga| SEG 68->81|gagmigiaaiagma| SEG 141->163|tgaaaafllglliigtgflilll| SEG 211->225|igiaagavvlvmmlv| SEG 427->444|sfvggallfvggflasga| SEG 467->498|lgavlvivgvllftlrvltvlpkapdpalapa| BL:PDB:NREP 1 BL:PDB:REP 228->465|1m57A|2e-15|21.9|228/547| RP:PFM:NREP 1 RP:PFM:REP 235->404|PF00115|1e-08|27.9|165/423|COX1| HM:PFM:NREP 1 HM:PFM:REP 24->471|PF00115|6.5e-45|25.8|426/447|COX1| GO:PFM:NREP 5 GO:PFM GO:0005506|"GO:iron ion binding"|PF00115|IPR000883| GO:PFM GO:0009055|"GO:electron carrier activity"|PF00115|IPR000883| GO:PFM GO:0009060|"GO:aerobic respiration"|PF00115|IPR000883| GO:PFM GO:0016021|"GO:integral to membrane"|PF00115|IPR000883| GO:PFM GO:0020037|"GO:heme binding"|PF00115|IPR000883| RP:SCP:NREP 1 RP:SCP:REP 226->466|1ehkA|2e-13|20.4|240/544|f.24.1.1| HM:SCP:REP 8->495|1m56A_|5.4e-65|22.7|467/547|f.24.1.1|1/1|Cytochrome c oxidase subunit I-like| OP:NHOMO 291 OP:NHOMOORG 242 OP:PATTERN 11----2233333324-1------211211-1-----------------------------1----11 -111-------------------------------------------------------------------------------2------------------------2---------------------------11111---131-11---11112122-211--32------------1--1----------------------------------11----------1----------------------------------------------------------------------------------------------------------------------------------------------------------1---2-------11111111111111111111211-111111111111--11-1121111--1--------1---112-111-----1111111111111111----1-------1112-------1111--11222211--1--11----1112--111--1---11-1-1-------1223-----------------1-1---1--1111----1-----------------------------1-----------------------------11-1--------------------------------------------------------------------------------------------------1111111---------------------------2-11111111111111---------------------------1111111111----11--111111----------------------------------------------2-- -----------------------------------------------------------------11---1-----1----------------1----1-------------1-111-----1-1--1-11--11-----1--11--------1-1----------12--1----1------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 237 STR:RPRED 47.5 SQ:SECSTR ###################################################################################################################################################################################################################################TcGGGTccHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHTTcccTTHHHHHHHHHHHHHHTTccGGGGGTccHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHTTcHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTTcEE##ccHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccccccccGccGGGHHHHH################################# DISOP:02AL 1-6, 491-499| PSIPRED ccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc //