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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59417.1
DDBJ      :             Single-stranded nucleic acid binding R3H
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  110/915 : Eukaryota  27/199 : Viruses  0/175   --->[See Alignment]
c.37.1c.72.2d.68.7
:496 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   123->236 1g3iV PDBj 4e-05 31.1 %
:RPS:PDB   84->294 2b3zD PDBj 5e-09 11.6 %
:RPS:PDB   458->493 2cpmA PDBj 4e-04 19.4 %
:RPS:SCOP  118->151 1lw7A2  c.37.1.1 * 9e-06 17.6 %
:RPS:SCOP  131->210 1gg4A4  c.72.2.1 * 3e-08 16.5 %
:RPS:SCOP  438->495 1mszA  d.68.7.1 * 2e-06 20.7 %
:HMM:SCOP  17->266 1g6oA_ c.37.1.11 * 3.5e-19 19.3 %
:HMM:SCOP  437->497 1mszA_ d.68.7.1 * 3e-05 26.2 %
:RPS:PFM   116->156 PF01695 * IstB 1e-04 56.8 %
:HMM:PFM   449->494 PF01424 * R3H 2.4e-08 32.6 46/55  
:HMM:PFM   124->215 PF00004 * AAA 6.5e-08 27.4 73/130  
:BLT:SWISS 29->304 YCF45_PORPU e-103 67.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59417.1 GT:GENE ABA59417.1 GT:PRODUCT Single-stranded nucleic acid binding R3H GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(3361668..3363158) GB:FROM 3361668 GB:TO 3363158 GB:DIRECTION - GB:PRODUCT Single-stranded nucleic acid binding R3H GB:PROTEIN_ID ABA59417.1 GB:DB_XREF GI:76884736 InterPro:IPR001374 InterPro:IPR003593 LENGTH 496 SQ:AASEQ MLNADLQSLLAVLPPVLRAALQGLPSHQLLEVIMDVGRLPQARFSERAVNLATDPVSPADLERVVALVGEFSADNRAGIEGTLHRIACLRNRRGEIIGLTLRVGRAVAGTIDFIQDLIERGDNLLLLGRPGVGKTTRLREIARVLADEFGKRVVIVDTSNEIGGDGDIPHPAIGSARRMQVSHPEQQHGVMIEAVENHMPEVIIVDEIGTTSEATAARTIAERGVQLIGTAHGNTLENLVMNPTLADLVGGVQAVTLGDDEARLRRTQKTIRERKALPTFDAVVEIVNREVMIVHPDTAGAVDKLLRGLGPGGIRRSPQGEEILSPKKSPLPESTKPVSIENQTGLIRIHPYALSRDTVERVIRDLRLEARTVKNPEQADFIIALRSRAEDARLRRLLQATRLPLYVVKKNTTAQIRRLLQNVLNILHGVPRDEVDTAVSEAEAAIKQVMEEGVTAALQPRSAAIRELQHRLAVRHHLLAESVGSEPQRHLIIHPV GT:EXON 1|1-496:0| BL:SWS:NREP 1 BL:SWS:REP 29->304|YCF45_PORPU|e-103|67.4|276/565| SEG 9->21|llavlppvlraal| SEG 305->316|llrglgpggirr| SEG 393->405|rlrrllqatrlpl| BL:PDB:NREP 1 BL:PDB:REP 123->236|1g3iV|4e-05|31.1|106/313| RP:PDB:NREP 2 RP:PDB:REP 84->294|2b3zD|5e-09|11.6|199/360| RP:PDB:REP 458->493|2cpmA|4e-04|19.4|36/94| RP:PFM:NREP 1 RP:PFM:REP 116->156|PF01695|1e-04|56.8|37/145|IstB| HM:PFM:NREP 2 HM:PFM:REP 449->494|PF01424|2.4e-08|32.6|46/55|R3H| HM:PFM:REP 124->215|PF00004|6.5e-08|27.4|73/130|AAA| GO:PFM:NREP 1 GO:PFM GO:0005524|"GO:ATP binding"|PF01695|IPR002611| RP:SCP:NREP 3 RP:SCP:REP 118->151|1lw7A2|9e-06|17.6|34/181|c.37.1.1| RP:SCP:REP 131->210|1gg4A4|3e-08|16.5|79/206|c.72.2.1| RP:SCP:REP 438->495|1mszA|2e-06|20.7|58/62|d.68.7.1| HM:SCP:REP 17->266|1g6oA_|3.5e-19|19.3|238/323|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 437->497|1mszA_|3e-05|26.2|61/0|d.68.7.1|1/1|R3H domain| OP:NHOMO 194 OP:NHOMOORG 137 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------11111111111111111111111111111111111-1-----1-----1---11--11111111111111111111111111111-1--------11------------------------------------------------------------------------------------------1--11111111111111111111-11---1--111-1--12-111111---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- --------211---2---------------------------------------------------------------------------------------------133-----------------------------------------------------------------632P221221222-52--31421 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 312-345, 388-394| PSIPRED cccccHHHHHHHccHHHHHHHHHccccccEEEEEcccccEEEEEccccEEcccccccHHHHHHHHHHHHHcccccEEEEcEEEEEEcHHHEEEccEEEEEEEEEccccccHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHcccEEEEEEEEccHHHccccccccccccccEEEEEcccHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHccHHHEEHHHHHHHHHHHHcccHHHHHHccccEEEccccHHHcccEEEEEEEcccccEEEEEEEEEccEEEEEHHHHHHHHHHHHccccccEEEEcccccEEccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHcccEEEEEcccccEEEEEEHHccccHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHcccEEEcccccccEEEEEcc //