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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59418.1
DDBJ      :             Anti-sigma factor antagonist
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  112/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.13.2
:111 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   21->107 1vc1A PDBj 4e-11 33.3 %
:RPS:PDB   1->108 1auzA PDBj 1e-18 24.3 %
:RPS:SCOP  1->108 1th8B  c.13.2.1 * 2e-19 23.4 %
:HMM:SCOP  1->109 1h4xA_ c.13.2.1 * 8e-27 39.8 %
:HMM:PFM   4->107 PF01740 * STAS 4.8e-19 28.2 103/117  
:BLT:SWISS 21->108 RSBV_STRCO 6e-11 31.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59418.1 GT:GENE ABA59418.1 GT:PRODUCT Anti-sigma factor antagonist GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 3363411..3363746 GB:FROM 3363411 GB:TO 3363746 GB:DIRECTION + GB:PRODUCT Anti-sigma factor antagonist GB:PROTEIN_ID ABA59418.1 GB:DB_XREF GI:76884737 InterPro:IPR002645 InterPro:IPR003658 LENGTH 111 SQ:AASEQ MNLHTEKTNGAVVLYIKEKRLDAHNSGELKDRMLELGEGGKVYLIVDLEEVRFIDSSGLGALLSGHKNTTLRNGSFKLCGLQSQVQSMFELTRLHRVFDIYPSVQEALGNN GT:EXON 1|1-111:0| BL:SWS:NREP 1 BL:SWS:REP 21->108|RSBV_STRCO|6e-11|31.8|88/113| BL:PDB:NREP 1 BL:PDB:REP 21->107|1vc1A|4e-11|33.3|87/110| RP:PDB:NREP 1 RP:PDB:REP 1->108|1auzA|1e-18|24.3|107/116| HM:PFM:NREP 1 HM:PFM:REP 4->107|PF01740|4.8e-19|28.2|103/117|STAS| RP:SCP:NREP 1 RP:SCP:REP 1->108|1th8B|2e-19|23.4|107/115|c.13.2.1| HM:SCP:REP 1->109|1h4xA_|8e-27|39.8|108/111|c.13.2.1|1/1|Anti-sigma factor antagonist SpoIIaa| OP:NHOMO 144 OP:NHOMOORG 112 OP:PATTERN -------------------------------------------------------------------- 12--1--1-------------------------111----1111-----11-11------1------11-1-----------1-----------------------1----------------------1--122-22222---1-511---1-1--------1-1-2322--------------------1-----------------11-----------1---------1---------------------------------------------------------------------------------------------1-1111111-1---11------1-----1-11--1------------1-----------------------------------------------------------------11-1111111--------------------------------------------------------------1---------------------------------------------1--------------21--1----3----1111-1111------12---------------------------------------------21-----22------1-1--------1------------------------------------21--------------------------------------------------------3----------------------------------------------------------1------------------------------13311-1---------1--------------------------2--11-1--1--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 107 STR:RPRED 96.4 SQ:SECSTR ccccEEEETTEEEEcccc#cccTTHHHHHHHHHHHHHcccccEEEEEccccccccTTHHHHHHHHHHHHHHHTccccEEcccTTTTHHHHHHccGGGTcccccGGGTG### DISOP:02AL 109-111| PSIPRED ccEEEEEEccEEEEEEEcccEEHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHccccEEEccccHHHHHccc //