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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59428.1
DDBJ      :             PAS domain protein
Swiss-Prot:             

Homologs  Archaea  12/68 : Bacteria  245/915 : Eukaryota  86/199 : Viruses  0/175   --->[See Alignment]
d.110.3
:150 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   23->144 2pr6B PDBj 6e-29 50.0 %
:RPS:PDB   16->130 3d72A PDBj 2e-34 40.4 %
:RPS:SCOP  28->134 1bywA  d.110.3.6 * 2e-27 20.6 %
:HMM:SCOP  25->131 1g28A_ d.110.3.6 * 5.7e-27 35.6 %
:RPS:PFM   19->131 PF00989 * PAS 4e-15 36.4 %
:HMM:PFM   20->130 PF00989 * PAS 1.4e-14 32.1 106/113  
:BLT:SWISS 18->150 PHOT_LISMO 3e-30 45.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59428.1 GT:GENE ABA59428.1 GT:PRODUCT PAS domain protein GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(3378582..3379034) GB:FROM 3378582 GB:TO 3379034 GB:DIRECTION - GB:PRODUCT PAS domain protein GB:PROTEIN_ID ABA59428.1 GB:DB_XREF GI:76884747 InterPro:IPR000014 InterPro:IPR000700 InterPro:IPR001610 LENGTH 150 SQ:AASEQ MPIMPFIVEKDEGLIPRVLSQILDSCVNGISLTDPDQEDNPLIYVNEAFEKITGYKKEEILGKNCRILQGNDRDQEGSRRVREAIQKRVPVEVDLKNYKKNGELFYNHLAINPVFDQEGNLLYFLGVQYDVTKQILAEQEIEKLRKALDK GT:EXON 1|1-150:0| BL:SWS:NREP 1 BL:SWS:REP 18->150|PHOT_LISMO|3e-30|45.5|132/253| BL:PDB:NREP 1 BL:PDB:REP 23->144|2pr6B|6e-29|50.0|116/125| RP:PDB:NREP 1 RP:PDB:REP 16->130|3d72A|2e-34|40.4|114/149| RP:PFM:NREP 1 RP:PFM:REP 19->131|PF00989|4e-15|36.4|110/112|PAS| HM:PFM:NREP 1 HM:PFM:REP 20->130|PF00989|1.4e-14|32.1|106/113|PAS| GO:PFM:NREP 1 GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00989|IPR013767| RP:SCP:NREP 1 RP:SCP:REP 28->134|1bywA|2e-27|20.6|107/110|d.110.3.6| HM:SCP:REP 25->131|1g28A_|5.7e-27|35.6|104/0|d.110.3.6|1/1|PYP-like sensor domain (PAS domain)| OP:NHOMO 880 OP:NHOMOORG 343 OP:PATTERN ------------------------51111238--------------1-1---1--------------1 --------------------------------1-----------31------1-----------------------------11--12-------------21----13-------------------13----61544-----1-121-11---44------1311343-------------2--------11---------------1---21---1--11--111111------------------------------------------------------------------------------------------------------------------------1----111----------------3411---------11--------11111111111-95277296-------1---121---1---3--1-1123-------------1B12------------------------------42-1------1----1-----1123-------11-1-1--2211111-2247--328214342---------1589-23---11-22--1-524632521-------27111----------------552231---324-2-1152233312122222212241---4814--------2-----------------------------------1-1-------------------------------11111111111---2-----32324-52--------------------------225555-422421243524-----1---41--------12-----12122-11------D-22--11-----------------------------------------------3- --------------24522211221121111-1----------11144223474333223331-----------------------1--11-511-1-11321233--E-411--------------------------------------------11---1111-1--2--31-343X22255868A3C446----A ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 148 STR:RPRED 98.7 SQ:SECSTR ##HHHHHHHccGGGccccccccccTTcccEEEEETTcTTccEEEEcHHHHHHHcccHHHHTTccGGGGGcTTccHHHHHHHHHHHHHTccEEEEEEEEcTTccEEEEEEEEEEEEcTTccEEEEEEEcccEEEcHHHHHHccccccGGHT DISOP:02AL 145-150| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccEEEEEcHHHHHHHcccHHHHccccHHccccccccHHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEEEEEEcccccEEEEEEEEEcHHHHHHHHHHHHHHHHHHHc //