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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59463.1
DDBJ      :             Excinuclease ABC subunit A
Swiss-Prot:             

Homologs  Archaea  27/68 : Bacteria  892/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
c.37.1e.11.1
:953 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->947 2r6fB PDBj 0.0 58.8 %
:RPS:PDB   1->360 1bjtA PDBj 1e-74 10.0 %
:RPS:PDB   479->949 3dt2A PDBj 1e-30 10.0 %
:RPS:SCOP  1->392 1bgwA  e.11.1.1 * 1e-68 10.5 %
:RPS:SCOP  480->584,623->651 1l7vC  c.37.1.12 * 5e-18 33.3 %
:RPS:SCOP  611->903 1e69A  c.37.1.12 * 6e-22 17.5 %
:HMM:SCOP  1->569 1ii8.1 c.37.1.12 * 8.6e-55 24.6 %
:HMM:SCOP  611->914 1f2t.1 c.37.1.12 * 1.1e-51 25.8 %
:RPS:PFM   308->390 PF04336 * DUF479 4e-04 27.5 %
:HMM:PFM   468->516 PF00005 * ABC_tran 1.9e-06 41.3 46/118  
:HMM:PFM   653->860 PF00005 * ABC_tran 5e-13 32.5 114/118  
:HMM:PFM   634->655 PF03193 * DUF258 0.00025 45.5 22/161  
:HMM:PFM   571->585 PF12399 * BCA_ABC_TP_C 0.00064 40.0 15/23  
:HMM:PFM   99->162 PF09856 * DUF2083 0.00017 30.2 63/156  
:BLT:SWISS 1->941 UVRA_PSEAE 0.0 69.5 %
:PROS 487->501|PS00211|ABC_TRANSPORTER_1
:PROS 829->843|PS00211|ABC_TRANSPORTER_1
:REPEAT 2|4->124|613->726
:REPEAT 2|406->592|762->935
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59463.1 GT:GENE ABA59463.1 GT:PRODUCT Excinuclease ABC subunit A GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION complement(3416327..3419188) GB:FROM 3416327 GB:TO 3419188 GB:DIRECTION - GB:PRODUCT Excinuclease ABC subunit A GB:PROTEIN_ID ABA59463.1 GB:DB_XREF GI:76884782 InterPro:IPR003439 InterPro:IPR003593 InterPro:IPR004602 LENGTH 953 SQ:AASEQ MNRICIRGARTHNLKNIDLDLPRERLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHMEGLSPAIAIEQKSTSHNPRSTVGTITEIYDYLRLLYARAGEPRCPEHGIILAAQTVSQMVDQVLGLPEGGRYMLLAPIVEGRKGEHLQVLENLLRRGFIRARIDGEVVELEQAPQLDGNKKHTIEAVVDRFKVRPDLQLRLAESFETAIQLSDGLARVASLEESALAEQVFSAHLACPVCRYSLSELEPRLFSFNNPKGACPSCEGLGVKPFFDSSRVVAHPELSLAAGAVRGWDRRNAYYYQMILSLARHYGFEVDLPFQDLPEAVRRVVLYGSGQEKITFRYLDSQDKQTIRRHAFEGVIPNMERHYRETETSAVREELARYLAVQVCPACQGTRLRQEARHVFVADYSLPEITALPVGQAQSLFSQLCLPGRRGAIANPILKEIQDRLGFLINVGLGYLTLNRRAETLSGGEAQRIRLASQIGAGLVGVMYILDEPSVGLHQRDHQRLLETLIRLRDRGNTVIVVEHDEEAIRAADQVIDMGPGAGRHGGEIVAQGTPLEIMANPASLTGQYLKGQKEIPMPCQRVPFNTSRLLSLRGAHGNNLDQVDLDIPLGAMTCITGVSGSGKSTLINDTLLRAATRILHRASVESAPYESIEGLEHLDKVIAIDQNPIGRTPRSNPATYTGFFASIRSLFAGTHEARSRGYGPGRFSFNVKGGRCESCQGDGLIKVEMHFLPDLYVACDVCQGKRYNRETLEIRYKGKSIDEILAMTVEEAQDFFANVPAVARKLLTLLEVGLSYITLGQNAVTLSGGEAQRIKLAKELARRDTGRTLYILDEPTTGLHFHDIAQLLQVLLRLRDGGNTIVIIEHHLDVIKTADWIVDLGPEGGEGGGRIIATGTPETVAACQASYTGRYLARILPKAKRGQSPVAAKP GT:EXON 1|1-953:0| BL:SWS:NREP 1 BL:SWS:REP 1->941|UVRA_PSEAE|0.0|69.5|940/945| PROS 487->501|PS00211|ABC_TRANSPORTER_1|PDOC00185| PROS 829->843|PS00211|ABC_TRANSPORTER_1|PDOC00185| NREPEAT 2 REPEAT 2|4->124|613->726| REPEAT 2|406->592|762->935| SEG 904->912|gpeggeggg| BL:PDB:NREP 1 BL:PDB:REP 2->947|2r6fB|0.0|58.8|859/864| RP:PDB:NREP 2 RP:PDB:REP 1->360|1bjtA|1e-74|10.0|350/679| RP:PDB:REP 479->949|3dt2A|1e-30|10.0|461/621| RP:PFM:NREP 1 RP:PFM:REP 308->390|PF04336|4e-04|27.5|80/106|DUF479| HM:PFM:NREP 5 HM:PFM:REP 468->516|PF00005|1.9e-06|41.3|46/118|ABC_tran| HM:PFM:REP 653->860|PF00005|5e-13|32.5|114/118|ABC_tran| HM:PFM:REP 634->655|PF03193|0.00025|45.5|22/161|DUF258| HM:PFM:REP 571->585|PF12399|0.00064|40.0|15/23|BCA_ABC_TP_C| HM:PFM:REP 99->162|PF09856|0.00017|30.2|63/156|DUF2083| GO:PFM:NREP 2 GO:PFM GO:0006633|"GO:fatty acid biosynthetic process"|PF04336|IPR007431| GO:PFM GO:0008770|"GO:[acyl-carrier-protein] phosphodiesterase activity"|PF04336|IPR007431| RP:SCP:NREP 3 RP:SCP:REP 1->392|1bgwA|1e-68|10.5|351/679|e.11.1.1| RP:SCP:REP 480->584,623->651|1l7vC|5e-18|33.3|128/231|c.37.1.12| RP:SCP:REP 611->903|1e69A|6e-22|17.5|246/263|c.37.1.12| HM:SCP:REP 1->569|1ii8.1|8.6e-55|24.6|341/370|c.37.1.12|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 611->914|1f2t.1|1.1e-51|25.8|287/0|c.37.1.12|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1338 OP:NHOMOORG 926 OP:PATTERN ------------------------11111111112---1111121112-2212-------------11 2341433222222211111-12111311111123333244122232132222333213112232322244433334331122111111222223222--2222324242311111111111111222222222222222221113111111111111111111111111111111111111112121111111122222221121122122111112211222113222222232221221222222233224223144122223422432112221111111111111222222222221111111111111111111111112221333234212135111111311111112122211111111111111423111111111112111111111111111111111-221222131111122111111211111112111111111212222221112111111111111--11111111111111111111211112222223323322222324322221222323221122222322232222211111111111111111122121211111111111111113221111114412111111111111111-11111111111111211112121111111111111111112--12222------21121111111111111-11-1111111111111111222111111111111111111111111111111-111111111111--1111111111111112111211111-111111112211121111111222212222121111111111111111111111111132222221111111111111111111111111111111-1-11111111111111111111111111111223 ------------------------------------------------1------------------------------------------------------------------------------------------------------------------1-1--------1----------1--1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 953 STR:RPRED 100.0 SQ:SECSTR HHHHcccTTTcccHHHHHHHHHHHHHTccccEEHHHHHHHHHHHTcccccccHHHHHHHHHcccTTccccccEEEcEcccccTTTTcTEEEETcccGGGcEEEEcTTHHHHccGGGGGGccEEEEEEccccHHHHHHHHHHHHTTccccccccccTTcccEEHEEEETTEEEEEcEEEEEETTEEEEEEccTTccHHHHHHHHHHHHcccTTccccccEEEEcccccccEEEEEEEccHHHHHHHHHHcHHHHTTcEEEEEcTTEEEEcTTccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccTTccHHHHHHHHHHTTccEEcTTccEEccHHHHHHHHHHHHHHHEEcccccccccTTTcccEETTTEEEEEcHHHHHHHHHHccTTGGGccccccEEGGGccccTTcHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHTccccccEEEccGGGHHHHHHHcccGGGcTTccHHHHHHHHHTHTcccHHHHHHccHHHHHHHHcHHHHHHHHHHHTccTcccccccccccccEEEHHHEEEccccccccccTTHHHHHHHHHHHHHHHHHcccEEEHHHEEEEEcccccccccHccEEEEEEccHHHcHHHHHHHHHHcTTccccGGGcEEEEEGGGTEEEEccccHHHHcTTTHHHHTHHHHHHHHHHTcEEEccEEEEccHEEcTTccEEEEEEEccTTccHHHHHTcccccTTcEEEEEcTTccEEEEccccEEEEEcTTccTTTcHHHHHEEEccEEETTccEEcTTccccTTccEEcTTccEEcTTcccccccTTTTTcEEEEEGGGcTTccTTTTcTTcEEEEEccccccccEEEcccHHHHHHHHTcEEEccccccccTTcEEEcGGGcTTTccccHHHHHHHHHHHGGGcTTcccTEEE DISOP:02AL 91-92, 937-953| PSIPRED ccEEEEEEEEEEccccEEEEEccccEEEEEcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccEEccccEEEEEEccccccccccccccHHHHHHHHHHHHHHccccccccccEEEEEccHHHHHHHHHHcccccEEEEEEEEEEccccHHHHHHHHHHHcccEEEEEccEEEEccccccccccccccEEEEEEEEEEcccHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEcHHHccccccccHHcccccccccccHHHHHHHHHHHHHccccccccHHHccHHHHHHEEEcccccEEEEEEEccccccEEEEccHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccEEEEccccHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHccEEEEEcccccccccEEEEEccHHHHHccccHHHHHHHcccccccHHHHHHHccccccEEccccccccccEEEEEEEcccEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccccEEccccccccEEEEEcccccccccccccEEEEEEccHHHHHHHHHHHHHHccccccccccccccHHHHcccccEEEEEHHHccccEEEcccccccccccHHEEEEEccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHccEEEEEcccccccccEEEEEccHHHHHccccHHHHHHHHHHccccccccccccccc //