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Nitrosococcus oceani ATCC 19707 (noce0)
Gene : ABA59504.1
DDBJ      :             Amino acid permease-associated region
Swiss-Prot:             

Homologs  Archaea  32/68 : Bacteria  534/915 : Eukaryota  104/199 : Viruses  0/175   --->[See Alignment]
:468 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   21->336 3giaA PDBj 7e-13 23.0 %
:RPS:PFM   42->416 PF00324 * AA_permease 2e-32 35.7 %
:HMM:PFM   28->423 PF00324 * AA_permease 4.8e-40 23.1 381/479  
:BLT:SWISS 3->455 YFNA_BACSU 4e-87 44.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABA59504.1 GT:GENE ABA59504.1 GT:PRODUCT Amino acid permease-associated region GT:DATABASE GIB00281CH01 GT:ORG noce0 GB:ACCESSION GIB00281CH01 GB:LOCATION 3452086..3453492 GB:FROM 3452086 GB:TO 3453492 GB:DIRECTION + GB:PRODUCT Amino acid permease-associated region GB:PROTEIN_ID ABA59504.1 GB:DB_XREF GI:76884823 InterPro:IPR002293 InterPro:IPR004841 LENGTH 468 SQ:AASEQ MKLFRTKPIETDLAKDTGLRKVLGAFDLVLLGIGAIIGAGIFVLTGIAAANYAGPAVVLSFVVAGMAVTLAALSYAELAAFIGGAGSAYGYGYAGLGEFVAWVIGWMLILEYTVAISAVSVGWSGYVGNALAAMQMHLPDVLTQTPSQGGWVNLPAMLIILILGILLATGAKVSAHFNAIMVFVKVAAILLFIGVAFFHVDTNHWTPFMPFGWQGVMTGAASIFFAYIGFDAVSTAAEETRNPQKDLPIGILGSLAICTLLYMLVAALLTGIVPYSSLDVPSPVSEALLQVGAKWASGMIAIGAIAGLTTVMLVLYFGLTRILFAISRDGLLPPFFSHINNRTGSPVRVILLSGLAMASIAGFAPLNDIVELTNIGTLGAFTVVCAGVAVLRYTRPELHRPFRIPFSPAVPLLGIAFCVYLMTQLSADTWTRFSVWLAAGLVIYFTYSYRHSKLSAPEESKPAHAPLE GT:EXON 1|1-468:0| BL:SWS:NREP 1 BL:SWS:REP 3->455|YFNA_BACSU|4e-87|44.8|453/461| TM:NTM 11 TM:REGION 23->45| TM:REGION 59->81| TM:REGION 98->120| TM:REGION 152->174| TM:REGION 178->199| TM:REGION 251->273| TM:REGION 300->322| TM:REGION 344->366| TM:REGION 372->394| TM:REGION 404->426| TM:REGION 428->449| SEG 32->41|gigaiigagi| SEG 83->97|ggagsaygygyaglg| SEG 158->167|liililgill| SEG 298->307|gmiaigaiag| BL:PDB:NREP 1 BL:PDB:REP 21->336|3giaA|7e-13|23.0|300/433| RP:PFM:NREP 1 RP:PFM:REP 42->416|PF00324|2e-32|35.7|359/429|AA_permease| HM:PFM:NREP 1 HM:PFM:REP 28->423|PF00324|4.8e-40|23.1|381/479|AA_permease| GO:PFM:NREP 3 GO:PFM GO:0006810|"GO:transport"|PF00324|IPR004841| GO:PFM GO:0016020|"GO:membrane"|PF00324|IPR004841| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00324|IPR004841| OP:NHOMO 2528 OP:NHOMOORG 670 OP:PATTERN ------1-------1-121----132222113--1--------41112-21221---1-1-4321--1 466221--11121132222-21225422222224342589----1131-221745213----2143C753131112221--14-1-11221212-----2-221-42532--------------1-1111--11-1------------------------------1-----------------------1528777776573567666115569576324115-2333226-222323222222222-2238234-23-2424666632354233111---21112111111111111122222222222222111111111-1-412323233-1--422-11--1-----111---2--11-5--41---3--2222-----22--1---12---11-1111---1-44144132---------11---22--11----------13333333323323-------------111111112111111-----11323----18887874666455546666378433333-1221-11--21-111----1122--------121---1---1---2-1-----------------11------------------------121--111---1----11111---1111--1-1-----1--1------36342416544643454-556554455554455555457524331332433333334344344434444--433233233333--1-4344322321--22--------1-1----AAAA755111-1896976341B9A91-2221---1--1-1-1------11-1-33677777793333----22------------1-------------------------------------1-- ----32----1-7611--------1----------------------1--1-----------1------1-------------------------1----2--232--1-GLLCIID65466B7ID5B7JbA1AAD3764P58MC58556O95B6BBDB8Mk54B36C69R6892122-71114479AK-9813C7EB- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 337 STR:RPRED 72.0 SQ:SECSTR ####################ccccHHHHHHHHHHHHHHHHTTTcHHHHHTHHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTcccTTTHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTccc####HHHHHTTccccHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccGGGTccccHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHc########################################################################################################### DISOP:02AL 8-24, 451-468| PSIPRED ccccccccccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc //