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Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL62507.1
DDBJ      :             binding protein, putative
Swiss-Prot:             

Homologs  Archaea  19/68 : Bacteria  139/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:313 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   61->227 3cvgD PDBj 4e-09 29.3 %
:RPS:PDB   47->269 1atgA PDBj 2e-10 15.9 %
:RPS:SCOP  47->269 1atgA  c.94.1.1 * 5e-11 15.5 %
:HMM:SCOP  47->269 1atgA_ c.94.1.1 * 1.8e-14 19.2 %
:HMM:PFM   81->191 PF03466 * LysR_substrate 1.2e-05 19.4 98/209  
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL62507.1 GT:GENE AAL62507.1 GT:PRODUCT binding protein, putative GT:DATABASE GIB00076CH01 GT:ORG paer1 GB:ACCESSION GIB00076CH01 GB:LOCATION 9243..10184 GB:FROM 9243 GB:TO 10184 GB:DIRECTION + GB:PRODUCT binding protein, putative GB:NOTE Transport and binding proteins; Anions GB:PROTEIN_ID AAL62507.1 GB:DB_XREF GI:18159055 LENGTH 313 SQ:AASEQ MSKIGYLIIIIVAIVAVAALLAIPRPQAPMTQTPMAQASTSTTTPQKIVLYMATTTSVKDTGLLDVLIPDFEKWAASRGYNIEVRYTAVGTGQALAMAARGDVDVVIVHAPSLEKQYLENGTLKCRDVIAYNFFIIVGPRDDPAGAKSLTATEAFRRIAEAKAPFVSRGDRSGTHLMELSLWRRAIGREPDPKNDTWYISAGAGMGQTLLLANEKSAYTLSDTGTWLRYRDKLPQLDVIVQAAPDLINIYSFSIVKLSNATRLMAQYMKTRGLEVIGNLTINGVSLFTPINKADPKAMEWIKTAIFGPSCVER GT:EXON 1|1-313:0| TM:NTM 1 TM:REGION 3->24| SEG 7->23|liiiivaivavaallai| BL:PDB:NREP 1 BL:PDB:REP 61->227|3cvgD|4e-09|29.3|164/263| RP:PDB:NREP 1 RP:PDB:REP 47->269|1atgA|2e-10|15.9|207/231| HM:PFM:NREP 1 HM:PFM:REP 81->191|PF03466|1.2e-05|19.4|98/209|LysR_substrate| RP:SCP:NREP 1 RP:SCP:REP 47->269|1atgA|5e-11|15.5|207/231|c.94.1.1| HM:SCP:REP 47->269|1atgA_|1.8e-14|19.2|203/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 185 OP:NHOMOORG 165 OP:PATTERN ---1-1----------1-11-11-1-----21--1--1------11211---1------1-------- ---------------------------------------------------------------------------------1-------------------------------------------------------------------------------------1------------------11---------------------------------------------------------------------------------------------------------------------------------------111--1111111-1--------------2--11---121-21111-12---1------------2----1-----------------111111111-------------1------1------111-------------2--------------------------------------1111------------------------11111111112-11-1111-111----------------11--1111112121222-111-11113------22-1---11111-----------1-----11---------11111-1211111111111----1-----------------------------------------------------------------------------------------------------------1-------------------------------------------------------11111111111111------------------------------------------------------------------1------ --------------------111--------------------------1---1---11-------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 265 STR:RPRED 84.7 SQ:SECSTR ##########################################ccTTcEEEEEEGGGTTHHHHHHHHHHHHHHHccEEcHHcccEEEEEEcHHHHHHHHHTTcccEEEccccHHHHHHHHTTcccTcEEEEEccEEEEEccTTTccTTGGGGccccccEEEEcTTTcHHHHHHHHHHHHTTcHHHHHccTTHTTcEEEEccHHHHHHHHHHHHTTcccEEEEEGGGTccTTcccccEEEcccGGGccccEEEEEEcTTcccHHHHHHHHHcHHHHHcccEEcccccccTTccccGGGGcccccccccH###### DISOP:02AL 1-2| PSIPRED cccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccEEEEEEEccHHHccHHHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHcccEEEEEEccHHHHHHHHHcccccccEEEEEccEEEEcccccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHcccccccccccccEEccccHHHHHHHHHHcccEEEEEcHHHHHHHcccccEEEEEEccHHHHcccEEEEEcHHHHHHHHHHHccHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHcccHHHcc //