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Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL62539.1
DDBJ      :             helicase, probable
Swiss-Prot:             

Homologs  Archaea  38/68 : Bacteria  61/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:609 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   2->397 2p6rA PDBj 3e-07 28.7 %
:RPS:PDB   7->211 3b6eA PDBj 8e-05 17.9 %
:RPS:PDB   262->363 1cu1A PDBj 1e-09 12.7 %
:RPS:SCOP  1->139 1eg7A  c.37.1.10 * 7e-05 16.7 %
:RPS:SCOP  253->409 2eyqA5  c.37.1.19 * 2e-10 20.1 %
:HMM:SCOP  28->382 2bmfA2 c.37.1.14 * 1.2e-26 28.5 %
:RPS:PFM   294->362 PF00271 * Helicase_C 4e-06 40.6 %
:HMM:PFM   23->218 PF00270 * DEAD 4.7e-10 21.7 152/167  
:HMM:PFM   298->363 PF00271 * Helicase_C 1.5e-08 30.3 66/78  
:BLT:SWISS 28->372 Y383_METJA 1e-29 32.6 %
:BLT:SWISS 382->482 HIS6_GEOSL 5e-04 31.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL62539.1 GT:GENE AAL62539.1 GT:PRODUCT helicase, probable GT:DATABASE GIB00076CH01 GT:ORG paer1 GB:ACCESSION GIB00076CH01 GB:LOCATION complement(36287..38116) GB:FROM 36287 GB:TO 38116 GB:DIRECTION - GB:PRODUCT helicase, probable GB:NOTE Unclassified GB:PROTEIN_ID AAL62539.1 GB:DB_XREF GI:18159090 LENGTH 609 SQ:AASEQ MIVDAYRKYAKALDLEERPALETALEELEKRGVVVLRAPTGYGKSLFSVAMGLAAYEELWQRGIAKVIHVIPMSSIVEDLYSRALERLTRKGEDADLKQLENALLEKYPRRWVGYQSWAIDADFKDPLYIWSSLVYTTFDSFVLNLYKITPLRAKRAPYESARSAIIRSLVILDEAHLMADPRGGKSLAVFIATIKSLRKLGVPVLIATATISDTVARLIKNAVDDVKIVASTVKECGKGGDVLVHDYGPKGHVDAYLKAIPLEELKNELKSQSFKKALLIFNTVDRAVRAYRMLRGEYNAVLLHGRLTLGDRSEAVMRAKSAEIVVATQVVEAGVDIDSDLLITDIAPFPNLIQRFGRVARREIKRGTAIINIDKNAYEASKAVYGENETEVTSKLLREYTKADKRLEVEWRNPCPEKNTYALLLEEFDRRAYPDIGRRYDVELSLALQTLNDLPTLSREDARNIMEKYCGFVRDAAAVPLIDPECYNNIKKPDEIRRCILLVSSDFLNNKKEYIITNGTIRVVVEALKRVDKMRDQVSNTLCKDRGVNEVSTEEYELPASMLFNAKGEVDCRKALALDYYVAKHIGTRAVVLGVIINKGYVRGEGLI GT:EXON 1|1-609:0| BL:SWS:NREP 2 BL:SWS:REP 28->372|Y383_METJA|1e-29|32.6|319/614| BL:SWS:REP 382->482|HIS6_GEOSL|5e-04|31.6|95/253| BL:PDB:NREP 1 BL:PDB:REP 2->397|2p6rA|3e-07|28.7|349/683| RP:PDB:NREP 2 RP:PDB:REP 7->211|3b6eA|8e-05|17.9|173/182| RP:PDB:REP 262->363|1cu1A|1e-09|12.7|102/645| RP:PFM:NREP 1 RP:PFM:REP 294->362|PF00271|4e-06|40.6|69/76|Helicase_C| HM:PFM:NREP 2 HM:PFM:REP 23->218|PF00270|4.7e-10|21.7|152/167|DEAD| HM:PFM:REP 298->363|PF00271|1.5e-08|30.3|66/78|Helicase_C| GO:PFM:NREP 3 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 2 RP:SCP:REP 1->139|1eg7A|7e-05|16.7|126/549|c.37.1.10| RP:SCP:REP 253->409|2eyqA5|2e-10|20.1|154/211|c.37.1.19| HM:SCP:REP 28->382|2bmfA2|1.2e-26|28.5|277/0|c.37.1.14|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 120 OP:NHOMOORG 99 OP:PATTERN --11111-1221113211111-22--------1-111-------1----1121-12312-1---111- ---1-1------------------------------------1-----------------1--------1-------------1-1211------1------------------------------1-1-1---11211-1---11-1---------------------------------------121-11---------1---------------2----------1--------------------------1---1-1------------------------------------------------------------21--------------1-----1--1-----11--2--1---1--13----2--------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------1---------------1-----------------------------------------------------------------------------------------------------------------------------------1-111-1------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------1--1-111--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 554 STR:RPRED 91.0 SQ:SECSTR #HHHHHHHTcccccccccTTHHHHHHHHHHHHHTTcEcccEEEcTTHHHccHcHHHHHHHHHHTccEEEEEccHHHHHHHHHHHHHHHHHHcTTcEEEEcccGGGTccccEEEGGGTEEEcccccccTTcHccHHHHHHHHHHHEEEEEEGGGcccEccHHHHHHcccccccccccccccccccHHHHHTTEEEEEEEEcTTcccccccccEEEEEEEEETTTcccccHHHHHHHHHHTTccTTTGGGcccEEEcccTcccEETTEEEcGGGTcccEEEEEccccHHHHHHHHHHHHTccEEEEcTTcccccccccccEEEEEcHHHHccccccEEEEEEEcccccccEEEEEEEEccHHHHHTccEEEcccEcccccHHHHHHHHcccHHHHHHHHHHHHcHcccGGccTcccccTTHHHHHHHHHHHHHHHHHHHHTTccTTHHHHTTccHHHHHHHHHHTTTTccHHHHHHHHHHHHTTccEEccEEEccccccccccT####cccccccEEccHHHHHTcccccccccTTHHHHHHTHHTGGGGGGGccHHHHHH################################################## PSIPRED ccHHHHHHHHHHccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccHHHHHHHHHHHccccEEEEcHHHHHHHHHHcccccHHHHHHHHHHHHccccEEEEEcHHHHcccccHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHccccEEEEEEcccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccEEEEHHHHHccccccccEEEEccccHHHHHHHHHHHccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccHHHcccHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccEEEHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc //