[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL62935.1
DDBJ      :             DNA-directed RNA polymerase subunit A' (rpoA1)
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  906/915 : Eukaryota  196/199 : Viruses  2/175   --->[See Alignment]
e.29.1
:884 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->879 2waqA PDBj 0.0 55.1 %
:RPS:PDB   5->865 2e2iA PDBj 0.0 40.5 %
:RPS:SCOP  3->877 1i3qA  e.29.1.2 * 0.0 40.1 %
:HMM:SCOP  3->877 1i50A_ e.29.1.2 * 0 48.0 %
:RPS:PFM   17->320 PF04997 * RNA_pol_Rpb1_1 5e-51 43.1 %
:RPS:PFM   325->491 PF00623 * RNA_pol_Rpb1_2 2e-55 60.0 %
:RPS:PFM   495->659 PF04983 * RNA_pol_Rpb1_3 8e-20 38.6 %
:RPS:PFM   697->789 PF05000 * RNA_pol_Rpb1_4 2e-13 36.6 %
:RPS:PFM   797->864 PF04998 * RNA_pol_Rpb1_5 8e-17 51.5 %
:HMM:PFM   13->323 PF04997 * RNA_pol_Rpb1_1 6.4e-93 45.0 311/338  
:HMM:PFM   325->492 PF00623 * RNA_pol_Rpb1_2 1e-69 58.4 166/166  
:HMM:PFM   495->657 PF04983 * RNA_pol_Rpb1_3 2.9e-35 38.7 150/157  
:HMM:PFM   797->862 PF04998 * RNA_pol_Rpb1_5 1.8e-30 65.2 66/277  
:HMM:PFM   688->790 PF05000 * RNA_pol_Rpb1_4 7.7e-29 44.7 103/108  
:BLT:SWISS 12->876 RPOA1_SULAC 0.0 57.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL62935.1 GT:GENE AAL62935.1 GT:PRODUCT DNA-directed RNA polymerase subunit A' (rpoA1) GT:DATABASE GIB00076CH01 GT:ORG paer1 GB:ACCESSION GIB00076CH01 GB:LOCATION 362969..365623 GB:FROM 362969 GB:TO 365623 GB:DIRECTION + GB:PRODUCT DNA-directed RNA polymerase subunit A' (rpoA1) GB:NOTE Transcription; DNA-dependent RNA polymerase GB:PROTEIN_ID AAL62935.1 GB:DB_XREF GI:18159516 LENGTH 884 SQ:AASEQ MSLREEFDAIPKKVIKSIKFGVLSPEMIRKYSVMEVTTSEVYDEGGLPVRGGIADRRLGVAEPGSRCETCGQTHDVCPGHFGHIELVKPVIHVGFARIIYDVLRATCPNCGRIMLRDEEIERYRERLNKLKARWRLLALNLHEKIRKKATERMTCPHCGYKRNKVRFERPYYFYEETKSGALVKLDPEVLRERLSKVPSEDLELLGINPSVARPEWAILKVLPVPPPHVRPSIQLETGIRSEDDLTHKLVDIIRMNEKLKIAIETGAPTNVVDNLWELLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTVISPDPHISINEVGVPYDIAKVLTVPERVTAWNVDVLREYVIRGPESWPGANYVVTPEGRRIDLRYVKDRKALAERLAPGWIVERHLIDGDIVLFNRQPSLHRVSMMGHLVKVLPGRTFRLHLAVCPPYNADFDGDEMNLHVPQTEEARAEARALMLVEKHIITPRYGGAIIGARQDYIIGAYLLSHKSTFLTKKEVAFLLGAGKSQEDPPEPAILHPVELWTGKQIISHFLPKDLNWVQPTAFKSKCQNAYTCPTDEWIIVINGNLVKGVLDKKSIGAEQVDSLWHRIARDYSPEVARRWLDSSLRLFLRFLDLRGFTFGMDSIYIPPEAYREIDNIIKASLEKVDKLIDDFRSGHLEAMPGFTVEETFENKVTEILSKVREDAAVVVEKYIDKNSEGYLMAKTGARGSIVNIVQMVATLGQQTIRGERIRRGFRTRTLPHFPVGDIGAFSGGFVRNCFRCGLTPVEYFFHAAAGRDGLIDTAVRTAQSGYMQRRLINALQDVYVAYDGTVRFGGAMLLQYLYGEDGVDVSRSDHGKVVDIKSLKMWIR GT:EXON 1|1-884:0| BL:SWS:NREP 1 BL:SWS:REP 12->876|RPOA1_SULAC|0.0|57.2|863/880| SEG 480->488|eearaeara| SEG 633->650|rrwldsslrlflrfldlr| SEG 759->773|tirgerirrgfrtrt| BL:PDB:NREP 1 BL:PDB:REP 13->879|2waqA|0.0|55.1|830/841| RP:PDB:NREP 1 RP:PDB:REP 5->865|2e2iA|0.0|40.5|852/1411| RP:PFM:NREP 5 RP:PFM:REP 17->320|PF04997|5e-51|43.1|297/326|RNA_pol_Rpb1_1| RP:PFM:REP 325->491|PF00623|2e-55|60.0|165/166|RNA_pol_Rpb1_2| RP:PFM:REP 495->659|PF04983|8e-20|38.6|145/145|RNA_pol_Rpb1_3| RP:PFM:REP 697->789|PF05000|2e-13|36.6|93/107|RNA_pol_Rpb1_4| RP:PFM:REP 797->864|PF04998|8e-17|51.5|68/471|RNA_pol_Rpb1_5| HM:PFM:NREP 5 HM:PFM:REP 13->323|PF04997|6.4e-93|45.0|311/338|RNA_pol_Rpb1_1| HM:PFM:REP 325->492|PF00623|1e-69|58.4|166/166|RNA_pol_Rpb1_2| HM:PFM:REP 495->657|PF04983|2.9e-35|38.7|150/157|RNA_pol_Rpb1_3| HM:PFM:REP 797->862|PF04998|1.8e-30|65.2|66/277|RNA_pol_Rpb1_5| HM:PFM:REP 688->790|PF05000|7.7e-29|44.7|103/108|RNA_pol_Rpb1_4| GO:PFM:NREP 15 GO:PFM GO:0003677|"GO:DNA binding"|PF04997|IPR007080| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04997|IPR007080| GO:PFM GO:0006350|"GO:transcription"|PF04997|IPR007080| GO:PFM GO:0003677|"GO:DNA binding"|PF00623|IPR000722| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF00623|IPR000722| GO:PFM GO:0006350|"GO:transcription"|PF00623|IPR000722| GO:PFM GO:0003677|"GO:DNA binding"|PF04983|IPR007066| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04983|IPR007066| GO:PFM GO:0006350|"GO:transcription"|PF04983|IPR007066| GO:PFM GO:0003677|"GO:DNA binding"|PF05000|IPR007083| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF05000|IPR007083| GO:PFM GO:0006350|"GO:transcription"|PF05000|IPR007083| GO:PFM GO:0003677|"GO:DNA binding"|PF04998|IPR007081| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04998|IPR007081| GO:PFM GO:0006350|"GO:transcription"|PF04998|IPR007081| RP:SCP:NREP 1 RP:SCP:REP 3->877|1i3qA|0.0|40.1|866/1414|e.29.1.2| HM:SCP:REP 3->877|1i50A_|0|48.0|864/1449|e.29.1.2|1/1|beta and beta-prime subunits of DNA dependent RNA-polymerase| OP:NHOMO 1788 OP:NHOMOORG 1172 OP:PATTERN 11111111111111111111111111111111114111111111112111111111111111111111 1111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112122222222222222222222222222222222222111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111--1-1111-11111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 33233333A34333333452333333333333333333434333333333333233333333333333133253343-5333333333-35433333333333334336483533563333333563324M3-3473323333222333342253734238L633J4323G33534343W33355F4273562363333 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1-- STR:NPRED 882 STR:RPRED 99.8 SQ:SECSTR ##cccccccccccccccEEcccccHHHHHHHcccccccccccccTTcccccccccTTTcccccccccTTccccTTTcccccEEcccccccccGGGcHHHHHHHTTccccccccccccTTccccHHHHcccccHHHHHHHHHTTccccccccccccccccccccccEEETTEEccccccccccEEEcHHHHHHHHTcccHHHHHHTccccccccTTTccccccEEccGGGcccccccccccccccHHHHHHHHHHHHcccHHHHccccccTTTHHHHHHHHHHHHHTTccccccccccccccccccccHHHHHcTTTcHHHHHTcccccccEEEEEEEEcTTccTTEEEEEHHHHHHccccccccTTTHHHHHHHHHHTTTccccEEEEEcccccEEcTTccccTcTTTccccTTcEEEEcccTTcEEEEEcccccccTTEEEEEEEEEccccEEEcTTcHHHHTccTTTcEEEEEccccHHHHHHHHTTcccGGGcEETTTTEEcccccTHHHHHHHHHHcTTcEEEHHHHHHHHHHcTTccccccccccccccEEEHHHHHTTTccTTccEEcccTTccccccccccTTccccEEETTEEEEccccHHHHcccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccTTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccccTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHTccccHHHHHHHHTccEEccccccccccccTTcccTTcccccccTTTTTEEcccTTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcEEcTTccEEcccccEEEccGGGTcccTccccHHHHHHHHTTccccc DISOP:02AL 1-4, 294-303| PSIPRED cccccccccccHHcccEEEEEEccHHHHHHcccEEEEEccEEcccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccccccEEEEcccEEcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcHHHHHccccccccccEEEEccccEEEEEEcccHHHHHHcccccEEcHHHHHHHHHHHHHcccccccccEEEEccccEEEEEEcHHHHHHHHHcccHHHHHHHHHcccEEEEEccccHHHccccEEEEEEEcccEEEEcccccccccccccccEEEEEEcccHHHHHHHHHHHcccccEEEcccccccEEHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccHHcccccccHHHHHHHHHcccccccccccccccccccccccccccEEEEEcccEEEcEEEEcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccEEEEcccEEccccEEEEEEEccccccHHHHHccccccHHHHHHHcc //