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Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL62989.1
DDBJ      :             replication factor C small subunit
Swiss-Prot:RFCS1_PYRAE  RecName: Full=Replication factor C small subunit 1;         Short=RFC small subunit 1;AltName: Full=Clamp loader small subunit 1;

Homologs  Archaea  68/68 : Bacteria  826/915 : Eukaryota  197/199 : Viruses  11/175   --->[See Alignment]
a.80.1c.37.1
:329 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   6->317 2chqA PDBj 3e-83 48.1 %
:RPS:PDB   6->312 2chqA PDBj 3e-43 52.4 %
:RPS:SCOP  6->209 1jr3A2  c.37.1.20 * 2e-50 26.2 %
:RPS:SCOP  229->318 1iqpA1  a.80.1.1 * 6e-20 38.9 %
:HMM:SCOP  2->221 1sxjB2 c.37.1.20 * 2.6e-57 38.5 %
:HMM:SCOP  224->318 1iqpA1 a.80.1.1 * 1.3e-21 35.9 %
:RPS:PFM   2->204 PF03215 * Rad17 3e-14 31.5 %
:RPS:PFM   229->309 PF08542 * Rep_fac_C 3e-10 33.8 %
:HMM:PFM   225->311 PF08542 * Rep_fac_C 1.5e-25 40.2 87/90  
:HMM:PFM   40->157 PF00004 * AAA 3e-18 24.3 111/130  
:HMM:PFM   9->62 PF05496 * RuvB_N 1.9e-11 46.3 54/234  
:BLT:SWISS 1->329 RFCS1_PYRAE e-174 100.0 %
:PROS 106->114|PS00039|DEAD_ATP_HELICASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL62989.1 GT:GENE AAL62989.1 GT:PRODUCT replication factor C small subunit GT:DATABASE GIB00076CH01 GT:ORG paer1 GB:ACCESSION GIB00076CH01 GB:LOCATION 407465..408454 GB:FROM 407465 GB:TO 408454 GB:DIRECTION + GB:PRODUCT replication factor C small subunit GB:NOTE DNA metabolism; DNA replication, recombination, and repair GB:PROTEIN_ID AAL62989.1 GB:DB_XREF GI:18159573 LENGTH 329 SQ:AASEQ MAELFWFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGVELREDAINMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAAIAVRPADIIELFNLAISGDFVKAREKLRELMYLKGIAGADFIRAFQRELIRMPIDDDIKAEIAELLADVDYRLTQGADEEIQLTYLLTKLGAIGRRVKPATTQPRKK GT:EXON 1|1-329:0| SW:ID RFCS1_PYRAE SW:DE RecName: Full=Replication factor C small subunit 1; Short=RFC small subunit 1;AltName: Full=Clamp loader small subunit 1; SW:GN Name=rfcS1; OrderedLocusNames=PAE0734; SW:KW ATP-binding; Complete proteome; DNA replication; Nucleotide-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->329|RFCS1_PYRAE|e-174|100.0|329/329| GO:SWS:NREP 3 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0006260|"GO:DNA replication"|DNA replication| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| PROS 106->114|PS00039|DEAD_ATP_HELICASE|PDOC00039| SEG 212->228|vvdanavasaaiavrpa| BL:PDB:NREP 1 BL:PDB:REP 6->317|2chqA|3e-83|48.1|312/313| RP:PDB:NREP 1 RP:PDB:REP 6->312|2chqA|3e-43|52.4|307/313| RP:PFM:NREP 2 RP:PFM:REP 2->204|PF03215|3e-14|31.5|203/379|Rad17| RP:PFM:REP 229->309|PF08542|3e-10|33.8|80/89|Rep_fac_C| HM:PFM:NREP 3 HM:PFM:REP 225->311|PF08542|1.5e-25|40.2|87/90|Rep_fac_C| HM:PFM:REP 40->157|PF00004|3e-18|24.3|111/130|AAA| HM:PFM:REP 9->62|PF05496|1.9e-11|46.3|54/234|RuvB_N| GO:PFM:NREP 7 GO:PFM GO:0005634|"GO:nucleus"|PF03215|IPR004582| GO:PFM GO:0006281|"GO:DNA repair"|PF03215|IPR004582| GO:PFM GO:0007049|"GO:cell cycle"|PF03215|IPR004582| GO:PFM GO:0003689|"GO:DNA clamp loader activity"|PF08542|IPR013748| GO:PFM GO:0005524|"GO:ATP binding"|PF08542|IPR013748| GO:PFM GO:0005663|"GO:DNA replication factor C complex"|PF08542|IPR013748| GO:PFM GO:0006260|"GO:DNA replication"|PF08542|IPR013748| RP:SCP:NREP 2 RP:SCP:REP 6->209|1jr3A2|2e-50|26.2|202/240|c.37.1.20| RP:SCP:REP 229->318|1iqpA1|6e-20|38.9|90/95|a.80.1.1| HM:SCP:REP 2->221|1sxjB2|2.6e-57|38.5|218/224|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 224->318|1iqpA1|1.3e-21|35.9|92/95|a.80.1.1|1/1|DNA polymerase III clamp loader subunits, C-terminal domain| OP:NHOMO 2221 OP:NHOMOORG 1102 OP:PATTERN 21222122222222222333333233333333222222222223333322333222222221212222 1-1-1111----2-21111-1211-21111111111111111-1-111-11-1112-1111111-1-111-11111111111-1-111222212221-112222222122111111111-11112122-12112221111111112223111111111221111-12321122222112112111111222212111111111111121111111111111212211111122111111111111111111121222122133322221211111121111111111112222222222211111111--11112211122212222222222332322311321212212222112212-123212222212121-11111121111111111111111111111111---2--1-11---111111111111111-1111111111111111111-111-11---11111111--1111-11111112111-1--11-1111111111111111111111111111222121211111---11----1111111111111111111111221122122211111111221242221221-1221221111111212112122212211111-111111111-1-1111112111-211--1111111-1111-111221111111111-1111111111111111111111112211-11111111111111111111111-------------11--11111111111-1111211-11111211122222222221211111111121221111111111111111111111111111111111111111111122222222-1-1-1111-111111-22111111111111111121111122222212 54446651D4444554454454445444444444444444544444344344443444544455564445465544444554445565-4844445644554457654859574455533343465262KQ8-6483444634633444243354454434434454444E44644454u55544C89A4954565664 ---1-1-------------1---11----------111-1----------------------------------------------------------------------------------------------------------------------------------4--4- DISOP:02AL 321-329| PSIPRED ccccHHHHHHccccHHHHcccHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHccccEEcccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHEEEEcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccc //