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Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL62997.1
DDBJ      :             RNA binding protein (fmu, PCNA P120 homolog), probable
Swiss-Prot:             

Homologs  Archaea  44/68 : Bacteria  335/915 : Eukaryota  184/199 : Viruses  0/175   --->[See Alignment]
b.122.1c.66.1
:379 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   35->84 1ixkA PDBj 1e-04 46.0 %
:BLT:PDB   100->159 2rfkA PDBj 1e-05 40.0 %
:BLT:PDB   132->373 1ixkA PDBj 1e-14 36.4 %
:RPS:PDB   12->75 3c6mC PDBj 1e-05 20.3 %
:RPS:PDB   108->161 2ausC PDBj 5e-08 29.6 %
:RPS:PDB   201->373 2as0A PDBj 4e-15 17.8 %
:RPS:SCOP  10->85 1ixkA  c.66.1.38 * 1e-10 31.6 %
:RPS:SCOP  99->160 1sqwA1  b.122.1.1 * 2e-10 14.5 %
:RPS:SCOP  144->373 1ixkA  c.66.1.38 * 1e-38 31.5 %
:HMM:SCOP  8->374 1sqgA2 c.66.1.38 * 2e-39 30.4 %
:RPS:PFM   99->158 PF01472 * PUA 9e-06 33.3 %
:RPS:PFM   169->372 PF01189 * Nol1_Nop2_Fmu 3e-21 40.7 %
:HMM:PFM   168->373 PF01189 * Nol1_Nop2_Fmu 3e-21 29.3 205/283  
:HMM:PFM   90->160 PF01472 * PUA 6.9e-18 42.3 71/74  
:BLT:SWISS 21->378 NSUN6_HUMAN 8e-26 31.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL62997.1 GT:GENE AAL62997.1 GT:PRODUCT RNA binding protein (fmu, PCNA P120 homolog), probable GT:DATABASE GIB00076CH01 GT:ORG paer1 GB:ACCESSION GIB00076CH01 GB:LOCATION 413700..414839 GB:FROM 413700 GB:TO 414839 GB:DIRECTION + GB:PRODUCT RNA binding protein (fmu, PCNA P120 homolog), probable GB:NOTE Protein fate; Protein modification and repair GB:PROTEIN_ID AAL62997.1 GB:DB_XREF GI:18159582 LENGTH 379 SQ:AASEQ MNLYGIEIDDLLYKHFLEFLSDAEIDSLFRSITTPPPRYYIRVNTLKISPRELVKRLNSRGLAVYRDEYIDDALWVPVEGPFKIPTAKKVVVVDKKAAESVMLGADLYAPAVIKTDRVNIGDEVNIVSDNGRVVALGVAVMDSDEALKARRGLYIKVEKSLYRTPKLRNLPEYAEGLFYSQSLPAILVGHIARRITQTDAVDLNSAPGGKTTHLAQMGIRVIAVDRSAQKIEKLRSEAARLGLDVFIDILLHDSRYLDRDFPKIKAGVALVDPPCTDIGVRPKIYHKVTFEAAKTLARYQIQFLKTALKIAPYVIYSTCTLTYIENEGVIEKAGAEIVDAGIEIGAPGWGCRECRRFLPHVHNTPGFFIAVLRGARKEP GT:EXON 1|1-379:0| BL:SWS:NREP 1 BL:SWS:REP 21->378|NSUN6_HUMAN|8e-26|31.3|351/469| SEG 87->98|akkvvvvdkkaa| BL:PDB:NREP 3 BL:PDB:REP 35->84|1ixkA|1e-04|46.0|48/298| BL:PDB:REP 100->159|2rfkA|1e-05|40.0|60/334| BL:PDB:REP 132->373|1ixkA|1e-14|36.4|225/298| RP:PDB:NREP 3 RP:PDB:REP 12->75|3c6mC|1e-05|20.3|61/291| RP:PDB:REP 108->161|2ausC|5e-08|29.6|54/311| RP:PDB:REP 201->373|2as0A|4e-15|17.8|163/382| RP:PFM:NREP 2 RP:PFM:REP 99->158|PF01472|9e-06|33.3|60/74|PUA| RP:PFM:REP 169->372|PF01189|3e-21|40.7|194/229|Nol1_Nop2_Fmu| HM:PFM:NREP 2 HM:PFM:REP 168->373|PF01189|3e-21|29.3|205/283|Nol1_Nop2_Fmu| HM:PFM:REP 90->160|PF01472|6.9e-18|42.3|71/74|PUA| GO:PFM:NREP 1 GO:PFM GO:0003723|"GO:RNA binding"|PF01472|IPR002478| RP:SCP:NREP 3 RP:SCP:REP 10->85|1ixkA|1e-10|31.6|73/305|c.66.1.38| RP:SCP:REP 99->160|1sqwA1|2e-10|14.5|62/76|b.122.1.1| RP:SCP:REP 144->373|1ixkA|1e-38|31.5|219/305|c.66.1.38| HM:SCP:REP 8->374|1sqgA2|2e-39|30.4|276/0|c.66.1.38|1/1|S-adenosyl-L-methionine-dependent methyltransferases| OP:NHOMO 763 OP:NHOMOORG 563 OP:PATTERN 2213253422222224112222231--1-1-1---1--1-111-----1----84444444---12-- -----------------------------------------------------------------1-----------------------------------------------------------1-111----11--------1-1111111--11-1--1-111-11111-11111-1111-----11-12111111111111111111111111122211--1-----111111111111111111--111122122-1-122111111111-11122211111111111111111111111111111112121112221111111111111111111111111121-212-111121111112121-1-1------11111--1111111-11-11111111111--------11-11------1---111111-11-----1-1--------------1--------------------------------1-11------------------------------11-11--1-------------------1----------11-1--------------11-11111111--3-11---------------------------------------21-1---12111--1-1-----------------1--1------------------------------2121-1-1-1--------------1-------1-1---------------1111111111---1---------------11-1111---11-111-1---------1----------1121111121---------------------1--------------------------1-------------------111-111--- 111121212111112111-11111111111111111111111111111111111111111112111111111111-111111111111-1111111111-1-111112116232241111214-421324E3-337211-2-233-1-1-22-31432221124321311-13321111811-1111121311222221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 356 STR:RPRED 93.9 SQ:SECSTR ###########cEEEEEEccHHHHHHHHHHHHHTTccEEEEEccccccccccHHHHTTccTTEEEEcTTccEEEEEEEEccccTTc############HHHHTTccEGGGEEEEETTccTTcEEEEEETTcEcccccccHTccccTTEEEEccccTTEEEEHHHcEEEEEEETTTEEEEEETTEEEEETTcHHHHHHHTTEETTcTTTHHHHHHHHTTcEEEEEEccHHHHHHHHHHHHHTTcGGGEEEEccHHHHHHHHHTTccEEEEEEcccccccccccccHccccGGGHHHHHHHHHHHHHHHEEEEEEEEEEEccTTccHHHHHHHHHHHHTTEEEEccccccccTTccccTcGGGcccEEEEEEEEEEEEcEE DISOP:02AL 1-2, 376-379| PSIPRED cccccccHHHHHHHHHHHHccHHHHHHHHHHHcccccEEEEEEEEEEccHHHHHHHHHHcccccEEcccccccccccEEccccccccccEEEEccHHHHHHHHHccccccEEEEccccccccEEEEEEcccEEEEHHHHHHHHHHHHcccccccccccccccccccHHccHHHHccEEEEEcHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHccEEEEEEccHHHHHHHHHHHHHcccccEEEEEEccccccHHHcccccEEEEEEcccccccccccHHHHcccHHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHccccccccccccccccccEEEEcEEccccEEEEEEEEEccccc //