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Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL63064.1
DDBJ      :             DNA ligase
Swiss-Prot:DNLI_PYRAE   RecName: Full=DNA ligase;         EC=6.5.1.1;AltName: Full=Polydeoxyribonucleotide synthase [ATP];

Homologs  Archaea  67/68 : Bacteria  172/915 : Eukaryota  194/199 : Viruses  2/175   --->[See Alignment]
a.235.1b.40.4d.142.2
:584 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   38->579 2hivA PDBj e-129 48.4 %
:RPS:PDB   2->584 2cfmA PDBj 2e-82 37.1 %
:RPS:SCOP  3->191 1x9nA1  a.235.1.1 * 1e-49 31.8 %
:RPS:SCOP  218->431 1x9nA3  d.142.2.1 * 5e-39 40.4 %
:RPS:SCOP  433->577 1x9nA2  b.40.4.6 * 9e-45 39.6 %
:HMM:SCOP  2->247 1x9nA1 a.235.1.1 * 1.4e-59 35.7 %
:HMM:SCOP  221->424 1a0iA2 d.142.2.1 * 1.3e-61 41.1 %
:HMM:SCOP  432->578 1x9nA2 b.40.4.6 * 4.9e-47 50.7 %
:RPS:PFM   3->180 PF04675 * DNA_ligase_A_N 6e-31 39.7 %
:RPS:PFM   227->424 PF01068 * DNA_ligase_A_M 3e-37 42.6 %
:RPS:PFM   462->559 PF04679 * DNA_ligase_A_C 1e-09 47.1 %
:HMM:PFM   226->424 PF01068 * DNA_ligase_A_M 1.4e-63 45.2 197/202  
:HMM:PFM   1->180 PF04675 * DNA_ligase_A_N 8e-52 41.1 175/176  
:HMM:PFM   449->559 PF04679 * DNA_ligase_A_C 2.9e-25 43.2 95/96  
:BLT:SWISS 1->584 DNLI_PYRAE 0.0 100.0 %
:PROS 249->257|PS00697|DNA_LIGASE_A1
:REPEAT 2|23->104|140->212
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL63064.1 GT:GENE AAL63064.1 GT:PRODUCT DNA ligase GT:DATABASE GIB00076CH01 GT:ORG paer1 GB:ACCESSION GIB00076CH01 GB:LOCATION 479299..481053 GB:FROM 479299 GB:TO 481053 GB:DIRECTION + GB:PRODUCT DNA ligase GB:NOTE DNA metabolism; DNA replication, recombination, and repair GB:PROTEIN_ID AAL63064.1 GB:DB_XREF GI:18159655 LENGTH 584 SQ:AASEQ MQFGELVKALAAIEATTQRTTMVKLLVSLFKKASPEEVGKIVYFILGDLRPPWEGVELGVAEKLCLRAVSKATGAAVSELEALYKKTGDVGEAARRALAASKRPGLLAFGSQKPLEVSEVYDTLLKVARATGEGAQDMKVALLSSLFARATPEEGKYIARFVVGKLRLGVADMTIIEALSDAYGVNKEALEKAYHIYPDLGRLAKHVAEGKPLDEIRITPGVPVLPMLAQRLSSASEILAKLGGSAICEYKYDGERAQIHLTPGGVKIFSRRLEDITHAYPDVVKAVKEAVSAKEAILEGEIVAVDPDTGDMLPFQELMHRKRKHDVATAVELYPTVLYLFDVLYVDGEDLTEEPLIYRRVRLSEIVCETDKVSIAKWRIFDNAEAVDVFFHESVSMGTEGLICKSPSSIYEMGARGWNWIKYKRDYRSEMIDTVDLVVVGAFHGRGKRAGLYGAFLLAAYDPSTDMFYTVCKVGSGFTDADLKKMYEILQPFKIPHRHPRVVSKMEADVWFVPQVVIEVIGAEITLSPLHTCCLGAVRPGVGLAVRFPRFTGRYRSDKSPEQATTVAEMLELYKRQKKVVQPE GT:EXON 1|1-584:0| SW:ID DNLI_PYRAE SW:DE RecName: Full=DNA ligase; EC=6.5.1.1;AltName: Full=Polydeoxyribonucleotide synthase [ATP]; SW:GN Name=lig; OrderedLocusNames=PAE0833; SW:KW ATP-binding; Cell cycle; Cell division; Complete proteome; DNA damage;DNA recombination; DNA repair; DNA replication; Ligase; Metal-binding;Nucleotide-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->584|DNLI_PYRAE|0.0|100.0|584/584| GO:SWS:NREP 10 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0007049|"GO:cell cycle"|Cell cycle| GO:SWS GO:0051301|"GO:cell division"|Cell division| GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006310|"GO:DNA recombination"|DNA recombination| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0006260|"GO:DNA replication"|DNA replication| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| PROS 249->257|PS00697|DNA_LIGASE_A1|PDOC00295| NREPEAT 1 REPEAT 2|23->104|140->212| SEG 283->296|vvkavkeavsakea| SEG 450->461|aglygafllaay| BL:PDB:NREP 1 BL:PDB:REP 38->579|2hivA|e-129|48.4|531/577| RP:PDB:NREP 1 RP:PDB:REP 2->584|2cfmA|2e-82|37.1|542/545| RP:PFM:NREP 3 RP:PFM:REP 3->180|PF04675|6e-31|39.7|174/177|DNA_ligase_A_N| RP:PFM:REP 227->424|PF01068|3e-37|42.6|197/201|DNA_ligase_A_M| RP:PFM:REP 462->559|PF04679|1e-09|47.1|85/101|DNA_ligase_A_C| HM:PFM:NREP 3 HM:PFM:REP 226->424|PF01068|1.4e-63|45.2|197/202|DNA_ligase_A_M| HM:PFM:REP 1->180|PF04675|8e-52|41.1|175/176|DNA_ligase_A_N| HM:PFM:REP 449->559|PF04679|2.9e-25|43.2|95/96|DNA_ligase_A_C| GO:PFM:NREP 14 GO:PFM GO:0003677|"GO:DNA binding"|PF04675|IPR012308| GO:PFM GO:0003910|"GO:DNA ligase (ATP) activity"|PF04675|IPR012308| GO:PFM GO:0006260|"GO:DNA replication"|PF04675|IPR012308| GO:PFM GO:0006281|"GO:DNA repair"|PF04675|IPR012308| GO:PFM GO:0006310|"GO:DNA recombination"|PF04675|IPR012308| GO:PFM GO:0003910|"GO:DNA ligase (ATP) activity"|PF01068|IPR012310| GO:PFM GO:0005524|"GO:ATP binding"|PF01068|IPR012310| GO:PFM GO:0006260|"GO:DNA replication"|PF01068|IPR012310| GO:PFM GO:0006281|"GO:DNA repair"|PF01068|IPR012310| GO:PFM GO:0006310|"GO:DNA recombination"|PF01068|IPR012310| GO:PFM GO:0003910|"GO:DNA ligase (ATP) activity"|PF04679|IPR012309| GO:PFM GO:0006260|"GO:DNA replication"|PF04679|IPR012309| GO:PFM GO:0006281|"GO:DNA repair"|PF04679|IPR012309| GO:PFM GO:0006310|"GO:DNA recombination"|PF04679|IPR012309| RP:SCP:NREP 3 RP:SCP:REP 3->191|1x9nA1|1e-49|31.8|176/264|a.235.1.1| RP:SCP:REP 218->431|1x9nA3|5e-39|40.4|213/220|d.142.2.1| RP:SCP:REP 433->577|1x9nA2|9e-45|39.6|144/148|b.40.4.6| HM:SCP:REP 2->247|1x9nA1|1.4e-59|35.7|241/0|a.235.1.1|1/1|ATP-dependent DNA ligase DNA-binding domain| HM:SCP:REP 221->424|1a0iA2|1.3e-61|41.1|202/0|d.142.2.1|1/1|DNA ligase/mRNA capping enzyme, catalytic domain| HM:SCP:REP 432->578|1x9nA2|4.9e-47|50.7|146/0|b.40.4.6|1/1|Nucleic acid-binding proteins| OP:NHOMO 895 OP:NHOMOORG 435 OP:PATTERN 11111111111111112111111211112-11111111111111111121222111111111112111 121-2----------3322-22--2222222222144252----121--1--13------113-1-1122----------1--1-1-------------2-1-114-2-2--------------1--------------11----------------11-111--------1---111-1--1-----11-1-----------------1----1------1---------11-----------------------------------------------------------------------------------------------------------------1----1-------11----111-----1-11111-----1-3-11-21-11-----------2-1111111113--144133113423-1-1--111---1----------1---1-1-------------------------------22-1-----1-------------11--------111--------121-----1-------1-------------1-1--------------111------122111------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-22212211222------------------------32-1211111-------------------------------------------------------------2- 1111334-311111333433333333333333333333333333333233333333333333222222-2222222213222222223-3523332223421221214A663434422233342671616J6-437332332362132223112243332433332131-612331221H1112312333432132222 ------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------1-- STR:NPRED 583 STR:RPRED 99.8 SQ:SECSTR #cHHHHHHHHHHHHTccHHHHHHHHHHHHHHHccGGGTTTHHHHHTTccccTTccccccccHHHHHHHHHHTHcccHHHHHHHHHHHccHHHHHHHHHHHHTTTccccHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcTccHHHHHHHHHHTHHTccccccHHHHHHHHHHTTcEEcHHHHHHHHHHccHHHHHHHHHHHHHHHHccccTTcccccEEEEEccHHHHHHHTHHccEEEEEEcccEEEEEEEETTEEEEEcTTccccGGGcHHHHHHHHHHccccEEEEEEEEEEccTTTcccccTHHHHHHHHccccHHHHHTccEEEEEEEEEEETTEEcTTccHHHHHHHHHHHccccccEEEccEEEEccHHHHHHHHHHHHHHTccEEEEcTTcccccTTcEEEEEEEEcccccccccccEEEEEEEEEEccGGGTTcEEEEEEEEEcTTTccEEEEEEEcccccHHHHHHHHHHGGGEEEEETTEEcTTccccEEEEccccEEEEEccEEEcccTccTTTTTcccTTccEEEccEEEEEEcTTccGGGcccHHHHHHHHHHHHHHHTcc DISOP:02AL 99-114, 126-140, 212-217, 318-327, 573-584| PSIPRED ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccEEEcccHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHcccccccccccccccccHHHHcccccHHHHHHcccccEEEEEccccEEEEEEEEccEEEEEEccccHHHHHHHHHHHHHHHHcccccEEEEEEEEEEccccccccHHHHHHccccccHHHHHHHHccEEEEEEEEEEccccccccccHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEEHHHHccHHEEEEEEEEEEEcccccccccEEEEEEEEEEccccEEEEEEEEEccccHHHHHHHHHHHHccccccccccccccccccEEEcccEEEEEEEccccccccccccccccccccEEEEEccccccEEcccccHHHcccHHHHHHHHHHHHHccccc //