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Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL63600.1
DDBJ      :             helicase, possible DNA repair rad25
Swiss-Prot:             

Homologs  Archaea  50/68 : Bacteria  271/915 : Eukaryota  173/199 : Viruses  3/175   --->[See Alignment]
c.37.1
:662 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   241->617 2fwrA PDBj 4e-47 34.6 %
:RPS:PDB   225->637 1cu1A PDBj 2e-22 14.4 %
:RPS:SCOP  249->440 2fwrA2  c.37.1.19 * 6e-34 35.6 %
:RPS:SCOP  508->617 2fwrA1  c.37.1.19 * 1e-15 39.3 %
:HMM:SCOP  162->440 1rifA_ c.37.1.23 * 8.5e-45 27.2 %
:HMM:SCOP  324->627 1wp9A2 c.37.1.19 * 1.5e-47 31.1 %
:RPS:PFM   287->359 PF00270 * DEAD 2e-06 43.1 %
:RPS:PFM   545->600 PF00271 * Helicase_C 1e-05 39.3 %
:HMM:PFM   283->422 PF04851 * ResIII 3.8e-19 32.9 140/184  
:HMM:PFM   527->600 PF00271 * Helicase_C 1.2e-17 33.8 74/78  
:BLT:SWISS 145->250 ARGC_PICTO 2e-05 28.3 %
:BLT:SWISS 287->650 XPB2_ARATH 8e-26 29.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL63600.1 GT:GENE AAL63600.1 GT:PRODUCT helicase, possible DNA repair rad25 GT:DATABASE GIB00076CH01 GT:ORG paer1 GB:ACCESSION GIB00076CH01 GB:LOCATION 941716..943704 GB:FROM 941716 GB:TO 943704 GB:DIRECTION + GB:PRODUCT helicase, possible DNA repair rad25 GB:NOTE DNA metabolism; DNA replication, recombination, and repair GB:PROTEIN_ID AAL63600.1 GB:DB_XREF GI:18160232 LENGTH 662 SQ:AASEQ MGLNMKLLLNVPRFVVAVNGIEIVREWPWERILRVKEELKRLGFRWDGASWRGKTRDVAMIARLRQLLELNNEEYLSILSSVGKSHGGGSIVVIGALPAELEQHVLASEGNAHVISLTGYLRRFIAEDKSISKASTFEEFVELGINRLRELLRGVEIWGELEKALNEAREFILASEKMKTLFEKRRSWRKAVIGLNYAKLNFLASGLLKRIGEFKLKYNVVNKDGELIEHNIKLVHLVQESGGYKLVFPVFIRERVVKTLEELGYVIQYESAEYPRVSYKKGFSLLPFQVEAVENWTSHGMRGTVIIPTGGGKTFVGLEAMYRAGTSAIVLVVTKELAAQWAERIRKYLGVSPGVLGGGYKEVRDVTVAIYNSAVKHIDELRGRFGLVIFDEAHHVPAETFKEVALSLESPFRLALSATPEREDQNEHLIYEAVGPPVYRASYRSMIEAGLVVPVEHYRIYVRMTREEEALYASLPQNNAIVLRNAAAKASKKIPIAVRVVVQEVALGSKVLVFTQFIDQAEELYKRLRESGIAAELITSEEGNREAAFRRFSNGLSKVVVTTTVLDEGVDVPDAEVAVIVSGTGSRRQMIQRAGRVVRATAGKRAARVYEIITRNTIEEALSEARHFDDVVEEAICKRLSEADLDSYLGKLAPLSPWLKKN GT:EXON 1|1-662:0| BL:SWS:NREP 2 BL:SWS:REP 145->250|ARGC_PICTO|2e-05|28.3|106/347| BL:SWS:REP 287->650|XPB2_ARATH|8e-26|29.3|358/766| SEG 67->81|llelnneeylsilss| SEG 486->493|aaakaskk| BL:PDB:NREP 1 BL:PDB:REP 241->617|2fwrA|4e-47|34.6|370/434| RP:PDB:NREP 1 RP:PDB:REP 225->637|1cu1A|2e-22|14.4|341/645| RP:PFM:NREP 2 RP:PFM:REP 287->359|PF00270|2e-06|43.1|72/167|DEAD| RP:PFM:REP 545->600|PF00271|1e-05|39.3|56/76|Helicase_C| HM:PFM:NREP 2 HM:PFM:REP 283->422|PF04851|3.8e-19|32.9|140/184|ResIII| HM:PFM:REP 527->600|PF00271|1.2e-17|33.8|74/78|Helicase_C| GO:PFM:NREP 6 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 2 RP:SCP:REP 249->440|2fwrA2|6e-34|35.6|191/234|c.37.1.19| RP:SCP:REP 508->617|2fwrA1|1e-15|39.3|107/200|c.37.1.19| HM:SCP:REP 162->440|1rifA_|8.5e-45|27.2|268/282|c.37.1.23|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 324->627|1wp9A2|1.5e-47|31.1|257/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 668 OP:NHOMOORG 497 OP:PATTERN 111111222222222231222221233241531--1--------1----1111-22221111112--- ----221133321211111-11111111111111111121-11111121111131--1--11211111-1-----------21-----1--3---------1-1---1--------------------1-11-1------1---1-1221111----------2--13421------------1-------121-----1------------------11---22------11---1111-1111-11------1-----------222112-----------------1------1-1-1--------1--------------1-1-----------1-111----------1--1-1--1---1---1-1----1---------------------------------11-1-------------------------2------1--------------------------------------------------------------------------------1-1--------1--------11--1------------------11431--11-11----------1-1--1-31-21-----------------------11111121-1-----11-1--------11----------1------111---11231111111-2111112111211-11111----111-111111111112111111111111--122212222111---------1-----1-----------------------------------------------11111111----------1--------------------21111111--------111-------------------------1--11----1--- 11111111411-4421121222122211111111111111-1111111111232112--111122111-2112111111112222221-221112122221211221312225111---1-11-11-2-171--21-11111111---111--1-211111-1111-212511111-114111-111212221111111 ----------------------------------------------------------------------------------------------------------------------------------------------------------------1------1-----1- STR:NPRED 511 STR:RPRED 77.2 SQ:SECSTR ############################################################################################################################################GGGcEEEEEEE##cccEEEEEETTTTEEEEEETTTccEEEcccTTTccEEEEEEEcc#######ccccEEEEEETTTccccEEEccEEEEEEEEEEETTEEEEEHTTccccEEEEEEHHHHHHHHGGHHHHHHHHHHcccccHcccccccccccccccccEEEEEEccccccTTTHHHHHHHTTTccEEEEEccHHHHHHHHHHHHHHTccEEEcccccccccccEEEEEHHHHHHHTcccTTcccEEEEETTTcGGGcccccccEETcEEETHHHccHHHHHHHHHHHHHTTTTTccEEEEEEcccTTccccccTTEEEEEccccccEEETTEEccccEEcccEEEccHHHHHHHHHHHEcGGGTcccEEEEEccccHHHHHHHHHHHHTTccEEEEcTTcccccccccEEEEEcTTHHHHccccccEEEEccEEEEEEEccccEEEEEEEEccHHHHHcccccEEEEEccccccccccccHHHHHHHHHHHHHTcccHHHHHHHHHTTccccccGGGc## DISOP:02AL 1-3| PSIPRED ccccEEHEEcccHHEEEEccHHHHHHccHHHHHHHHHHHHHcccEEcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHHcccEEEEEcccEEEHEEccccccHHHHHHHHHHHccccccccEEccHHHHHHHHcccccEEEcccccccHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHcccHHHHccccccccccccEEEEEEcccccEEEEcccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEcHHHHHHHHHHccccccEEEEEccHHcccHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccHHHHHHHHHHHHccccccEEEEEEEccccccHHEEEccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHcccccEEEEEEHHHcccccccccEEEEEcccccHHHHHHHHHHcccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHcc //