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Pyrobaculum aerophilum str. IM2 (paer1)
Gene : AAL63830.1
DDBJ      :             carbon monoxide dehydrogenase medium subunit, conjectural
Swiss-Prot:             

Homologs  Archaea  21/68 : Bacteria  267/915 : Eukaryota  11/199 : Viruses  0/175   --->[See Alignment]
d.145.1d.87.2
:272 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->271 1zxiF PDBj 3e-38 36.9 %
:RPS:PDB   3->268 2ckjA PDBj 5e-28 18.4 %
:RPS:SCOP  1->171 1rm6B2  d.145.1.3 * 1e-33 30.1 %
:RPS:SCOP  172->271 1t3qC1  d.87.2.1 * 1e-21 22.0 %
:HMM:SCOP  1->171 1rm6B2 d.145.1.3 * 1.7e-47 44.6 %
:HMM:SCOP  170->272 1t3qC1 d.87.2.1 * 3.7e-30 45.6 %
:RPS:PFM   6->168 PF00941 * FAD_binding_5 1e-15 40.1 %
:RPS:PFM   172->269 PF03450 * CO_deh_flav_C 1e-13 48.0 %
:HMM:PFM   5->164 PF00941 * FAD_binding_5 3.1e-44 40.6 160/171  
:HMM:PFM   172->270 PF03450 * CO_deh_flav_C 1.7e-26 42.9 98/103  
:BLT:SWISS 1->265 DCMM_OLICO 1e-35 36.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAL63830.1 GT:GENE AAL63830.1 GT:PRODUCT carbon monoxide dehydrogenase medium subunit, conjectural GT:DATABASE GIB00076CH01 GT:ORG paer1 GB:ACCESSION GIB00076CH01 GB:LOCATION complement(1142160..1142978) GB:FROM 1142160 GB:TO 1142978 GB:DIRECTION - GB:PRODUCT carbon monoxide dehydrogenase medium subunit, conjectural GB:NOTE Energy metabolism; Other GB:PROTEIN_ID AAL63830.1 GB:DB_XREF GI:18160480 LENGTH 272 SQ:AASEQ MYPPNFEYVRATSLDEALKLLSSRDDSAPLAGGQSLIPLLKLRAVSYGLLVDISRLSELRYARYGEVVELGALTRHFELEESPCPFLRQVASRIGDVQIRSLGTLGGSLAHADPFGDWPAAMLALGGVVKIIGPGGRREVEAEKFFKGAYSTALERGELVAGVAFKCPQRGAYVKFSRRHNDFALAAVAVTGEVKEGRVFNVKIAALGAADRPVRLRKVEAVLESAPLRPEVIDEAVEAARREANPPSDFRASAEYRRHLIGVALRRALGRL GT:EXON 1|1-272:0| BL:SWS:NREP 1 BL:SWS:REP 1->265|DCMM_OLICO|1e-35|36.2|265/288| BL:PDB:NREP 1 BL:PDB:REP 1->271|1zxiF|3e-38|36.9|271/286| RP:PDB:NREP 1 RP:PDB:REP 3->268|2ckjA|5e-28|18.4|266/1264| RP:PFM:NREP 2 RP:PFM:REP 6->168|PF00941|1e-15|40.1|162/171|FAD_binding_5| RP:PFM:REP 172->269|PF03450|1e-13|48.0|98/102|CO_deh_flav_C| HM:PFM:NREP 2 HM:PFM:REP 5->164|PF00941|3.1e-44|40.6|160/171|FAD_binding_5| HM:PFM:REP 172->270|PF03450|1.7e-26|42.9|98/103|CO_deh_flav_C| GO:PFM:NREP 2 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00941|IPR002346| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00941|IPR002346| RP:SCP:NREP 2 RP:SCP:REP 1->171|1rm6B2|1e-33|30.1|166/216|d.145.1.3| RP:SCP:REP 172->271|1t3qC1|1e-21|22.0|100/109|d.87.2.1| HM:SCP:REP 1->171|1rm6B2|1.7e-47|44.6|168/0|d.145.1.3|1/1|FAD-binding domain| HM:SCP:REP 170->272|1t3qC1|3.7e-30|45.6|103/109|d.87.2.1|1/1|CO dehydrogenase flavoprotein C-terminal domain-like| OP:NHOMO 489 OP:NHOMOORG 299 OP:PATTERN 113-1-2322223323--21111-----1--------------------------------1------ --212------------11-11--241111111222-1351--2--------1-11------7--351221-----------3----------------------1------------------------------11111----5-----1--------------------------------2--------------1-------------------11-------------------------------------------------------------------------------------------------------22-11111121111-1------1--1----1----221-112----------1-1--------56721133263111111111-1-1151-413341-21112252114612---5412222334111111114111-211--------------------------------1--2221-2111111----1145------1194672--3321-111111-32-2-----------------11-1-1-1----1------1111---1----11-2---------------------------1--1--1-1-------------------------1------------1--1111111111-111111111111111111-------------------------11--1111-----------------------------111---------------1111111---1111111111111111111-------------1---------------------------1-------------------------------------------22-1-----1-- -------------------1----1--------------------------------------------------------------------------------------12--------------------------------------------11----3--------------------11--1--1------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 272 STR:RPRED 100.0 SQ:SECSTR EEccccEEEEcccHHHHHHHHHHcTTcEEccccTTHHHHHHHccccccEEEEccccGGGccEEEccEEEEETTccHHHHHHHHHHHHHHHHTTcccHHHHTTccHHHHHHcccTTcccHHHHHHHTcccEEEcTTccccccccTTccccTTccccTTcEEEEEEEEcccTTEEEEEEEEccccccEEEEEEccTTcccccEEEEEEETcccccEEcTHHHHHHTTccccHHHHHHHHHHHHHHTccTTcTTccHHHHHHHHHHHHHHHHHHH DISOP:02AL 272-273| PSIPRED cccccccEEccccHHHHHHHHHHccccEEEEcccHHHHHHHcccccccEEEEcccccccEEEEEcccEEEEEcccHHHHHHcccHHHHHHHHHHccHHHccEEEEcccccccccHHHHHHHHHHcccEEEEEEcccEEEEEHHHHHHcccccccccccEEEEEEEEccccccEEEEcccccccccEEEEEEEEEEccEEEEEEEEEEcccccEEEHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHc //